Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_0122 |
Symbol | |
ID | 5603031 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | - |
Start bp | 130011 |
End bp | 131882 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640935608 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_001476360 |
Protein GI | 157368371 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTTC CTGTAACCCT TGAAATGAGC GTAAAAAAAG TGGCCATCCT GACGCAGTTA AGCCGCGGTC TGACCCGCTT TACCGCCTGG GGTGGAGCAC TGGCGCTGCT GATCAACGTG GTGGTGGTAT TCGCCTCGGT GATTTGGCGC TACGCGCTGC ACAGCCCGAT TGAATGGGCG GAAGAAGTGG CGCGCGCGCT GATGGTAACG CTGGTGTTCT TCGGCGTCGC CACCTCCACC GGGCGTGGCC GACACATCGG CGTCGATCTG TTCCTGCGCT GGCTGCCCGC GGTAGCCCGG CCCTACGTGG TGCATGCCAG CCGTTGGGTG CTGGTACTGG TGGCGCTGGG CCTGACGGTG TCCAGCTTCA GCCTGGTGGG TATTTCACTG CCACAGACCA CCGAACACGG CCTGCCACAG GCGATCTTCG TGGTTCCGGT GTTCATCGGC GCGGCAGTGA TGCTGGTCAG CGCGCTCGAT CACGCCTGCC AGGCACCGTT GAAAGTGGTG TTAATCAGCG CCGCCGCCGT CGCTCTTCTG GGCGGCGCTG GCTACCTCAG CCTGCATGCC CCGCTGGGGT TCAGCTCGCT GCCCGCCGCG CTGATGCTGG CCTGCTTTAT CCTGGGCATC ATCTCCGGCG TGCCAATCGC CTTTACCCTG GGCATGTCGG CTATGGTGTT CTTTCTTAGC GATCCATCGC TGCCATTCGT GTTCTTTGCC CAGCAGGTGA CCGCCGGCGT CGATCATTTT GTGCTGCTGG CCATTCCGTT CTTTCTGCTG GCTGGTGCGG TGATGGAGGT CAACGGCATG TCGTCACGGC TGGTTGAGCT GATCGTGCGC GGCATGGGGC GTTATCGCGG TGGCCTGAAT ATGACCACGA TTGTATCGAT GGCCTTCTTC TCGGGTATTT CCGGCTCCAA ACTGGCAGAC GTCGCCACGG TCGGCGGCGT GCTGATGCCC GCGGTACGCC GGGCACGCCA ACCGGCCGCA GAGTCTGCCG GGGTGTTCGC CGCCTCGGCG ATCATGGCGG AAACCATCCC CCCCTGCGTC AATCTGATCG TGATGGGCTT TATTGCCAAT ATTTCGATTG GCGCACTGTT TATCGCCGGC CTGATCCCAG CGCTGTGCCT GCTGGTGTTG CTGCTGATTG CCGCCGTGAT CTTCGGCAAG CGCATCAACG TCGATGACGC CTACCCGGTG CGAATGCCAA CCCGCCAACT GCTGATCGGT GCCGCCGTCG GGCTGGTGAT GATTTTGATG ATCGGCAAGG GCGTGGTGGC CGGTATCGCC ACCTCCACCG AGATTTCCGC CTTTGCCGTG GTTTACGCCA TCGTGGTCGG TCGGCTGGCC TTTGGGGAAC TGACCCTGAA AGCCACGGTG AAGTTGTTCG TCGACACCGC AGCGCTGTCC GGCATGCTGT TGTTTATCGT CGCCTGCGCC ACCAGTTTGT CCTTCGCTCT GACCATCGAG ATGATCCCGC AGCAGTGCGC GCAACTGTTG GTCGCCATCG GCGCGGACTA CGGCCCGTGG CTGTTTCTGC TGCTGTCGAT TGTCATCCTG ATTATTTTCG GCGCGGTGCT GGAGGGGGCT CCGGCGCTGA TTATCTTTGC CCCCATCCTG GTCCCTATCG CCACCCAGCT CGGCTTCAAC CCGCTGCACT ACGCCATTGT GATGATTCTG GCGATGGGCT TCGGCCTGTT TTCCCCGCCG ATCGGCCTGG GCCTGTACAC CACCTGCGCC ATTTGCGGCG TACCGATGCA GGACGTGATT AAACCTATGG CCAAGTACCT GCTGATCATC CTGCTCGGCA TCATTGTTAT CGCGCTGTTC CCGGCGCTCA CCACCTGGCT GCCCACGCGG CTGGGCTACT GA
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Protein sequence | MTLPVTLEMS VKKVAILTQL SRGLTRFTAW GGALALLINV VVVFASVIWR YALHSPIEWA EEVARALMVT LVFFGVATST GRGRHIGVDL FLRWLPAVAR PYVVHASRWV LVLVALGLTV SSFSLVGISL PQTTEHGLPQ AIFVVPVFIG AAVMLVSALD HACQAPLKVV LISAAAVALL GGAGYLSLHA PLGFSSLPAA LMLACFILGI ISGVPIAFTL GMSAMVFFLS DPSLPFVFFA QQVTAGVDHF VLLAIPFFLL AGAVMEVNGM SSRLVELIVR GMGRYRGGLN MTTIVSMAFF SGISGSKLAD VATVGGVLMP AVRRARQPAA ESAGVFAASA IMAETIPPCV NLIVMGFIAN ISIGALFIAG LIPALCLLVL LLIAAVIFGK RINVDDAYPV RMPTRQLLIG AAVGLVMILM IGKGVVAGIA TSTEISAFAV VYAIVVGRLA FGELTLKATV KLFVDTAALS GMLLFIVACA TSLSFALTIE MIPQQCAQLL VAIGADYGPW LFLLLSIVIL IIFGAVLEGA PALIIFAPIL VPIATQLGFN PLHYAIVMIL AMGFGLFSPP IGLGLYTTCA ICGVPMQDVI KPMAKYLLII LLGIIVIALF PALTTWLPTR LGY
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