| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4190 |
|---|
| Symbol | |
|---|
| ID | 5664574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 5085047 |
|---|
| End bp | 5086606 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641238854 |
|---|
| Product | TAP domain-containing protein |
|---|
| Protein accession | YP_001504035 |
|---|
| Protein GI | 157964001 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCATG GAATGTACTC TCAACTACGC GCTCGGGTTT CACCTTCGTT CTGGCGTCAT
AAACCCGCAG CCATTGCCGT GCTACTTGGA GCTGGCCTAG TTATTCCTGC TGCACAGGCG
GACACTTCAG CCAACACTGC TCAGGTAACG CCTAACAATC AACAAGCCTG TTACGTCGAC
GGCCTCTCAG AGCAGATGCA GTGCGGCTCT ATCCTGGTTC CAGAAAATTA CGCCAAGCCA
GACGGTAAGC AGATTCAAAT TCACTATGTG GTGATGCCCG CCATTAAGCC CAGCGACAAG
GTCGAAGCCC TTTTAGCGAT TGCTGGCGGC CCCGGGCAAT CGGCAATCGA GAATGCTCAA
GGCTTCGATC GTATGCTCAC TAAGGTACGT CAGACTGAAG ATGTCATTCT TATCGACCAA
CGCGGTACGG GTCAGTCAAA CCCGCTGCAA TGCATAGGTG ATGGTTTTGA AAGTGCACTC
GCTATTAATG AAAGTGATTT TGATACCCGG GTCGAAACTC AAAAATGTCT CGAGAGCTTA
GATGCGGATG TCACCCAATA CGGCAGCCTG AGTGCACTTA AAGATTTTGA AGCAGTAAGA
CAGCACCTTG GCTACCAGAA GCTGCATCTA TACGGCGTAT CCTATGGCAC ACGCATGGCG
CAGCTCTATA TGCGTCACTA TCCAGAGCAC CTAGCAACGG TCACCTTAGA TGGCGTAGTC
CCTATGCAGC AGAGCGTACT GGCCATCGGC AATGCTATCG CTCGCGCCTT CGATCTTCTG
ATTGAAGACT GCGCTAACAA CGCCCTCTGC CACACACAGT TTCCAGAGCT AAGAGCTGAT
CTTGAAAAAG TCGATGCCGA GCTAGCTCAA GCCCCCAGAG TCAGCCAAGT ACCGGATCCA
CTGACGGGCG AATTGACCCA GCTGACCATG ACCCGCAGCA AGTTTAAAGG CGCACTACGC
ATGGCGCTGT ATTCTCCAAG TACGCGTTCG CTTATCCCCC ATGCGATTCA CCAAGCAGCC
AATGGCAACT TCCAACCTAT CACTGGCTTA TACGCCTTAG GGATCGATAA TGCCGGCATC
GCCATGGGCA TGCATGCCTC TGTGGTCTGT GGTGAAGATT GGCAGCGACT GTCGCCTGAG
TTGCGTGCAA AAACCAGTGA GAGCTACTTT GGCAAAGAGA TGCTAAAAAC CTTTGCCGAG
TCCTGCGCCG TATGGAGTGT GCCAGCGGTG GATGCCAGCT TTAGCGACCC CATCGCCAGT
GATATCCCCA CTCTTTTACT CTCGGGCGAA CTCGACCCTG CCACACCGCC AAGCTGGGGC
GAACTTGCCA TGGAAAAGCT CAGCAATGCT AAGCACTTTA TCGCCCCCTA TGCGACTCAC
GGCGTTGCGT ATCAGTCCTG TGGTAATGAT CTTATTGCAG AGCTGGTAGA GCAAGGTTCG
GTCGCCGAAC TCGATGCAGA ATGCCTCAAT GAGGATATTC GCCGCAACTT CTACCTTAAC
GCCAGCACAG TAGAAGCGAT CCCGTCAGCT ACCGACGAAC AAACAGCCCT GATTAAGTAA
|
|---|
| Protein sequence | MLHGMYSQLR ARVSPSFWRH KPAAIAVLLG AGLVIPAAQA DTSANTAQVT PNNQQACYVD
GLSEQMQCGS ILVPENYAKP DGKQIQIHYV VMPAIKPSDK VEALLAIAGG PGQSAIENAQ
GFDRMLTKVR QTEDVILIDQ RGTGQSNPLQ CIGDGFESAL AINESDFDTR VETQKCLESL
DADVTQYGSL SALKDFEAVR QHLGYQKLHL YGVSYGTRMA QLYMRHYPEH LATVTLDGVV
PMQQSVLAIG NAIARAFDLL IEDCANNALC HTQFPELRAD LEKVDAELAQ APRVSQVPDP
LTGELTQLTM TRSKFKGALR MALYSPSTRS LIPHAIHQAA NGNFQPITGL YALGIDNAGI
AMGMHASVVC GEDWQRLSPE LRAKTSESYF GKEMLKTFAE SCAVWSVPAV DASFSDPIAS
DIPTLLLSGE LDPATPPSWG ELAMEKLSNA KHFIAPYATH GVAYQSCGND LIAELVEQGS
VAELDAECLN EDIRRNFYLN ASTVEAIPSA TDEQTALIK
|
|---|
| |