| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4071 |
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| Symbol | |
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| ID | 5664455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4948040 |
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| End bp | 4949992 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238735 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001503916 |
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| Protein GI | 157963882 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC ACTTCGAACT GATCGATAAG CCGACTTTTT TCGGCGCACT ATTACTGCTT
TGTGCAGTTG TTATTCCCTT ACTGTTATTT CCAGCAGAAG GAGCTGAGTG GATTGCAGTT
GCTAAAACAT TTATGACAGA CAAACTAGGC TTTGCTTATT TAGGTTTAGG CTTAGCGGCA
TTTTTCTTCA TGATCTATAT CGTTTTCTCT GATATCGGTC AGATTAAACT AGGCGATCCT
GATGAAAAGC CAGAGTTTGC GTTGGCGTCT TGGGCGGCAA TGTTATTCTG TGGTGGTATC
GGTGCCAGTA TTTTGTATTG GGGTACTATT GAGTGGGCAT ATTACTACCA AAACCCACCA
TTCCAGCTAG AAGCGGGCAG TGAAGAGGCG GTGCGTTGGG CTGCCACTTA CGGCTTGTTC
CACTGGGGAC CAATTGCTTG GTGTATCTAT ATGATCCCAG CGATTCCAAT TGCTTACTTC
TTCTATGTGC GTAAGCAGCC AGTACTAAAA GTCTCTGCTG CTTTAATGCC GGTTATTGGC
GAAGCGAATA GCTTTGGTAA GCTAGGTAAA GTCATTGATG TGCTATTTAT CTTCGGTCTA
TTGGGCGGCG CGGCAACCAC GTTAGGTTTA GCGGCACCAT TGATTAACGA AGGTATTAGC
TACCTGTTTG GTATTCCTGC GACGACTGGC AGCCAAATTT TAGTGCTAAT GGTATGTACC
GGTATCTTTG CTTACTCTTC TTACATGGGC ATGGACAAAG GCATTAAGAT TTTAAGTAAC
ATTAACTTCT GGGGTGCCTT AGGTTTACTG CTGTTTGTAC TGGTTTGTGG CCCAACAATC
TTCATGTTGG AAACAGGCTT AGATTCAATC GGTCGTATGT TGTCTAACTT CTTTGTTATG
GCGACTTGGG CTGAGCCTTT CGGTGGTATG GGTACGTTTG AAGATACCCA CTTCCCACAA
GATTGGACGA TTTTCTACTG GGCGTGGTGG TTAGTATTTG CGCCAAGTAT GGGTCTATTT
GTTGCACGTA TTTCACGTGG TAGAACGATT AAGCAGATGG TGTCTGGTGC GGTATTCTTC
GGCTCACTAG GCTGTTCAAT GTACTTCATC ATTCTTGGTA ACTACGGTTT ATCACTGCAG
TTGTCTGGTG AACTCGATGT GGTGAGCATT CTGAATGCAG AAGGCGCGAC TCGCGCAATC
TTCGCAATTT TAGAAACACT GCCATTTAGT ACCTTGGTCA TTGCTGTATT TACCTTGTTA
TGTGTGATTT TCACCGCGAC GACTTTCGAC TCTATCTCTT ACATCTTAGC GTCAGTTGTA
CAAACTAACG TGACTGAAGA TCCTTTGCGT TGGAACCGTC TGTTCTGGGC TTTCACTCTA
TCATTTATGC CTTCGGCACT GATGTTTATG GGCGGCTTAG CAACATTGCA AACGGCGGCG
ATTGTAGGTG GTTTACCACT TCTGACTATC GCGGTGATGT TAATGATCTC CGGTGTTAAG
GCGGCGACAT TAGACTTAGC GCATCAAGAT GATTACGTCG ATCCTGTGAT TAATATTTCA
GATCTACCTG ATGTCGACCC TTGGAGCAAA GAAGGTCAGG CATTGGCTCG TTTTGAAGGA
CTACGTGATA ACGCTATCGA AGCGGCAGAG CTTGAGCGTG AAGCTAACGA TGCTATCTGG
ATGCTTAAGA AGCAGTTACG TAAAGAGGCA TTATCACGTG GCGAATCTAG TGTTGACTTG
GGCGATGCAC CTGATGAGAT CATCGAAAAA CTACGCCAGT TAACTGATGA CTCGATGAAA
GCTAAAGAAG CTAAACTTGC GGCGTCAGAG CTTGCACAAG AAGCACGTGT AGCCTTCGAT
GCGCTAATGC GTAGCAAGGA AGAGGAAGAG GCATTATTAG CTCAGGAAGA AGTTAAGCAG
GCTATTCAAG CACGATTGAA TACCCCTAGC TAA
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| Protein sequence | MKKHFELIDK PTFFGALLLL CAVVIPLLLF PAEGAEWIAV AKTFMTDKLG FAYLGLGLAA
FFFMIYIVFS DIGQIKLGDP DEKPEFALAS WAAMLFCGGI GASILYWGTI EWAYYYQNPP
FQLEAGSEEA VRWAATYGLF HWGPIAWCIY MIPAIPIAYF FYVRKQPVLK VSAALMPVIG
EANSFGKLGK VIDVLFIFGL LGGAATTLGL AAPLINEGIS YLFGIPATTG SQILVLMVCT
GIFAYSSYMG MDKGIKILSN INFWGALGLL LFVLVCGPTI FMLETGLDSI GRMLSNFFVM
ATWAEPFGGM GTFEDTHFPQ DWTIFYWAWW LVFAPSMGLF VARISRGRTI KQMVSGAVFF
GSLGCSMYFI ILGNYGLSLQ LSGELDVVSI LNAEGATRAI FAILETLPFS TLVIAVFTLL
CVIFTATTFD SISYILASVV QTNVTEDPLR WNRLFWAFTL SFMPSALMFM GGLATLQTAA
IVGGLPLLTI AVMLMISGVK AATLDLAHQD DYVDPVINIS DLPDVDPWSK EGQALARFEG
LRDNAIEAAE LEREANDAIW MLKKQLRKEA LSRGESSVDL GDAPDEIIEK LRQLTDDSMK
AKEAKLAASE LAQEARVAFD ALMRSKEEEE ALLAQEEVKQ AIQARLNTPS
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