| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4053 |
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| Symbol | vmrA |
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| ID | 5664437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4924017 |
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| End bp | 4925414 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641238717 |
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| Product | multidrug efflux pump VmrA |
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| Protein accession | YP_001503898 |
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| Protein GI | 157963864 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATC CAAGCATAGA AAACACACAG ACTCAGTCAA TTAGCCGTAC CTTTTGGCGT
TACACTCTGC CTGCCATTGC CGCCATGTTA GTTAACGGTT TATACCAAAT CGTTGACGGT
ATTTTTATTG GCCATTACAT CGGCTTTGAA GGACTCGCAG CTATCAATAT GGCCTGGCCT
GTGATCTACT TTATGGTTGG TTTTGGCATC ATGGTCGGCA TGGGTAGTGG CAGCTTGCTA
TCGATTCAAC GGGGTAAAGG CGATACTCGC GCGGCACCGA CGATATTGAC CAGCAGCTTA
GTACTCATGC TTAGTCTAGC CATAATCTCT ACCTCGATTT TAGTCATCTG CAGCGACTTT
TTTCTTGAGG CTCAGGGCGG TGCGGGCAAC ACCTTGGTGA TGGCGCAAGA GTATATTAGC
GTATTCACTT GGGGAACTGC GATCACTGTG ATTGCTTCAG CCTTGCCGTT GCTCATTCGT
AACGATGAGA GCCCCAATAT CGCTACCGGT TTAATGGTAT TAGGCGCCTT TATCAATATT
GCACTCGACT ATCTATTGAT AGGCGTATTT GACTTCGGCT TGCTTGGCGC TTCGATTGCC
ACCATTAGTG CACAGGCGAC TGTCTGTGTT TTAGGTCTTA TCTACTTTTG CTCTCGATTT
AGCAGCATTA ACTGGTCGGC AAAATTTAGT TGGTTTAACG CCTCTTTTGC TCAACAAATC
ACGCTGTTAG GCTCATCAAG CCTATTTATG TATCTGTATA CCAGCTTTGT TTTTGCACTG
CATAACCGAC TCTTTACAGA GTATGGTACA CCGCTAACCG TAGGCGCCTT CGCCATTGTT
GGCTACCTGA TGGTGCTATA TTACTTAGTC GCCGAAGGTG TGGCCGAGGG TATGCAGCCT
CCTGTTAGTT ATTACTACGG CGCCGAGCAA CATGAAAACA TCAACAAGAT GCTTAAGCTG
TCGGTAAAGG TGACTCTGAT TGCGGGTACC AGCTGGGTAT TACTGCTAAA CCTAATGCCA
GAGACCATGG TTGGACTATT CAACAATGAT GATCCCTTGC TAATTGCAAC CGCAATTGAT
GGTATCAAAA TGCATCTGTT TGCTATGCCG TTAGATGGCT TTATTGCACT TTCGTCTGTG
TACTTTATGG CGACTAACCA AGGCGTTAAA GCGTTAGTCA TCGCCTGTGG CAATATGCTA
ATCCAGCTGC CATTCCTATA TTTCTTACCT AAGGTTATGG GAGTCGAAGG TGTGTGGATG
GCGATGCCGC TCTCCAACAT AGCACTGTGC CTTATTGTGG CGCCTATGGT TTGGTTTGAT
GTTAAGTCGA GAAAGAAGCA ATCAAGAGCG CAGCAAGATA ATCCGTTAAC TATCGATACA
GCGGCAATCG TAAGTTAA
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| Protein sequence | MLDPSIENTQ TQSISRTFWR YTLPAIAAML VNGLYQIVDG IFIGHYIGFE GLAAINMAWP
VIYFMVGFGI MVGMGSGSLL SIQRGKGDTR AAPTILTSSL VLMLSLAIIS TSILVICSDF
FLEAQGGAGN TLVMAQEYIS VFTWGTAITV IASALPLLIR NDESPNIATG LMVLGAFINI
ALDYLLIGVF DFGLLGASIA TISAQATVCV LGLIYFCSRF SSINWSAKFS WFNASFAQQI
TLLGSSSLFM YLYTSFVFAL HNRLFTEYGT PLTVGAFAIV GYLMVLYYLV AEGVAEGMQP
PVSYYYGAEQ HENINKMLKL SVKVTLIAGT SWVLLLNLMP ETMVGLFNND DPLLIATAID
GIKMHLFAMP LDGFIALSSV YFMATNQGVK ALVIACGNML IQLPFLYFLP KVMGVEGVWM
AMPLSNIALC LIVAPMVWFD VKSRKKQSRA QQDNPLTIDT AAIVS
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