| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4017 |
|---|
| Symbol | ompR |
|---|
| ID | 5664401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4879682 |
|---|
| End bp | 4880407 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641238681 |
|---|
| Product | osmolarity response regulator |
|---|
| Protein accession | YP_001503862 |
|---|
| Protein GI | 157963828 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACACG AAACCTCAAA AATTCTCGTC GTCGACGATG ATATGAGACT ACGCGCATTA
CTAGAACGTT ACTTGATGGA GCAAGGTTAT CAAGTGCGTA GCGCCGCCAA TGCAGAACAG
ATGGATCGCC TACTCGAGCG AGAAAACTTC CACCTGTTAG TACTCGATCT AATGCTTCCC
GGTGAAGACG GCCTGTCTAT CTGTCGCCGA CTTCGTCAAA CTGGCAACCC AATTCCTATC
GTGATGTTGA CCGCAAAAGG CGACGAAGTA GATAGAATCA TCGGCCTAGA GTTAGGTGCC
GATGACTACT TGCCAAAGCC CTTTAATCCA CGAGAGCTAT TAGCCCGCAT TAAAGCCGTT
ATGCGTCGTC AAACCCCCGA GGTGCCAGGT GCTCCAACCC AGCAAGAAGA AGAGATCACC
TTTGGTGAAT ACTCTCTAAA CCTTGCGACC CGTGAAATGC ATCATGGCGA AGAGAGCATC
GCACTGACTA GCGGCGAATT TGCCGTGCTT AAAGTGCTTG TCAGCCATCC AAGAGAGCCC
CTTTCACGTG ACAAGCTGAT GAATCTGGCA CGTGGCCGCG ATTACTCGGC ACTAGAGCGA
TCAATTGACG TGCAAGTTTC ACGTCTGCGT CGACTCATTG AAAAAGATGC TGCCAACCCG
CGCTACATTC AGACTGTGTG GGGCTTAGGT TATGTATTTG TGCCAGATGG CCAGTCACGC
AAATAA
|
|---|
| Protein sequence | MGHETSKILV VDDDMRLRAL LERYLMEQGY QVRSAANAEQ MDRLLERENF HLLVLDLMLP
GEDGLSICRR LRQTGNPIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV
MRRQTPEVPG APTQQEEEIT FGEYSLNLAT REMHHGEESI ALTSGEFAVL KVLVSHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDAANP RYIQTVWGLG YVFVPDGQSR
K
|
|---|
| |