Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3745 |
Symbol | |
ID | 5664130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 4553394 |
End bp | 4554365 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641238405 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001503591 |
Protein GI | 157963557 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGTACTA ATCGCATCTT GGCAGCAGTG GCATTCATCG TTTTAATTGG CGCTTTGGTA TATGGATTAA TCTTGGCTTA TTCACCTAAG CCACAATTGC TGCAGGGGCA GATCGAGGCG CGTGAGTACA ACATCTCCTC AAAAGTTCCT GGTCGAGTCG AAGAGGTTTT GGTTCGTCGC GGCGACAAGG TTAATGAAGG CGATCTGCTA TATGCCATCT ATAGCCCAGA ACTTAAAGCT AAATTGATGC AGGCAGAAGG CGGCCGTGAT GCGGCGCTGG CAATGCAGCA GGAAGCGGAT AATGGTGCAC GTAAGCAGCA GATAGCCGCC TCTAAAGAGC AATGGTTAAA AGCGCAGGCG GCGGCTAAGT TAGCACGCAC CACCTTCGAT CGCGTCGAAG TGCTATTTAA TGAAGGCGTG CTAGCAAGAC AGAAGCGTGA TGAAGCCTTT ACTCAGTGGC AAGCGGCTAA GTATACCGAG CAAGCTGCAC TGGCCATGTA TCAGATGGCA GATGAAGGCG CACGAGTGGA AACCAAGGCT GCAGCCGCCG GAAATGCGCG TATGGCCGAA GGTGCCGTTA ACGAAGTCTC TGCCATTCTT GCCGATAGTC AAATGCGCTC ACCTAAAACT GGTGAGATCA GCGAGGTACT GCTGCAGGCT GGCGAATTAG CACCAAGTGG CTTCCCGGTA GTCAGCTTAA TCGATATGAA TGATGCTTGG GCGGTATTCC AAGTGCGCGA GGATCAGCTT AAAAAGTTCA AGCAAGGCGA TGTACTTAAG TTGACTATCC CTGCACTCGA GCGAGAAGTG GAGTTCACTG TGAGTCATAT TGGCGTCATG GGTGAGTTTG CCACCTGGCG TGCCACAGAG AGCGGTCATG ACTTCGATAT GCGTACCTTC GAAGTTGAGC TGCGTCCCAA TGAGACGATC AAAGATCTAA GAGTCGGCAT GTCGATACTG TTCACCCTTT AG
|
Protein sequence | MRTNRILAAV AFIVLIGALV YGLILAYSPK PQLLQGQIEA REYNISSKVP GRVEEVLVRR GDKVNEGDLL YAIYSPELKA KLMQAEGGRD AALAMQQEAD NGARKQQIAA SKEQWLKAQA AAKLARTTFD RVEVLFNEGV LARQKRDEAF TQWQAAKYTE QAALAMYQMA DEGARVETKA AAAGNARMAE GAVNEVSAIL ADSQMRSPKT GEISEVLLQA GELAPSGFPV VSLIDMNDAW AVFQVREDQL KKFKQGDVLK LTIPALEREV EFTVSHIGVM GEFATWRATE SGHDFDMRTF EVELRPNETI KDLRVGMSIL FTL
|
| |