| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3649 |
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| Symbol | |
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| ID | 5664034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4437204 |
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| End bp | 4439573 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238309 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001503495 |
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| Protein GI | 157963461 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCACAA GTAACATGAA ACACTTTAAA TGGTTTAACA GCAAAACCGC GATCATCATT
GCTGGCATCT TATTGAGCGG CTACTTAATT CTTATTTTGA CTGTGACCAA TTTAGGCCAG
AGTCGCTTAA AAGAGTCACA AAATAGCGAG CTTAATTTAA GAGTCAGTAA TTACACCGAA
AACTTAAGTT TCTTCTTCGA TGCCAGTGAA AAAAATATTG CCAACCTGAG TCAGAAGCGT
GACGTTAATA CCTATTTCTC AAATTTAGCG GCAGGTATGT CGCTGCAGTA TGGACTCGGT
TCGAGTCTAT TTAGTCTTAC TCAGATGATA GAAAACTTTA CCCGATCAAA CATGATGGAT
GGTCAGCAGA TCTACACAAG AGTGATGATT GTCGGGATAG GGCAAACCGT TATTGTTAAT
ACTCGACCAG AGGTGGCGTT TGATATTAAC CAGCTCCCCC TGAAAGAGAT GGAAACAAAA
GACCATAAAC TTCAGGTAGT TAAAGGCGTA GAAGGGACCG CCATTCAGTT ACTGCAGACG
ATTTATCATC AGAATAAACC CGTTGCGATT CTAGTTGCCA CCCTAAATAC CGATCTGCTG
ATTAAACTTC TCTCGACGCA GGAGCATCTC GAGAGCGGCA GCTGCTTGAC CTTGGTAACC
CCCATCGGAG ACATACTGGT TTGGAATTCA TTGCAAGGTT GTGAAACTGA AACTGAAATT
GGTAAGACTA GCTATTACGG CGATAATTCT AGGATCATCT ATTTTGAGAA AAAGGTCGCG
TCGACGCCGC TGGTGCTGGA GAGTTGGTTT AAGCCCGTTA GTGAGCAAGA TATTTTCACC
TCTGCGTGGT TTATAGCGGG GATCTCTCTT CTGGCGTTGC CAGTATTTCT GGGTTTGATC
TACCTGATGC GAGTGAATAA CGCCAACTTA GTGCTACAGA CTCAGGTGGA GTTATCTTCA
GAACAACAAC AAAAACTGGC GATGCAAAAC ACTCAGCTGC ATGAAGAGAT TTCTAAGCGT
AAGGAGTCTG AAAGTAAGCT GGAATATCAG GCGACTCATG ATGAATTAAC CAACTTAGCC
AATCGCACCC ATGGCATGGC TCGCTTGCAG GAGATGATTG GTCGTTCCCA TGTGAAACAG
ACCCAAATTC TGTTGCTGTT TATCGATCTA GATAACTTTA AGCAGGTTAA TGATACCGTG
GGCCATCACG CTGGCGATCT GCTATTAAAG CAAGCCAGTA AGCGCCTACT AAAGTCTGTG
CGTACCAGTG ATATTGTCGC TCGCTTAGGT GGTGATGAGT TCTTGGTGAT TGTGCCAGAT
ATCCAGCATC AAGACTCTGC CAAGTTGGTA GCGAGTAGTA TTTTATCTGT GTTTGAAAAG
CCATTTCGAA TTGAGCAGCA AGAATTTTTT GTCTCGGCCA GTATCGGTAT GTCTGTTTAC
CCTAAAGATG GTACCAATGC TTCGACTCTG CTGAAACGCG CCGACACCGC GCTATACAGC
GTTAAAGATA TGGGCAGGAA CGGTTTTAAC TTTTACGATG AGCAGATGAA CCTAGATGTG
CAGCGTAGTT TTGCCCTCAA TGTACGTTTA CATCAGGCCG TGCAGCAAGG CGAATTAGAG
ATCTACTATC AACCGATCTT AGATCTGGTT AGTCGTAAGA TCGTCGCTGC CGAAGCCCTT
ATGCGCTGGA CCGATAGCGA GCTTGGTTTT GTTTCTCCAG AGGATTTCAT TCCTTTGGCT
GAGAAAAATG GCTTGATCCA CCGACTCGGC GACATCGTCT TACTTGAGGC TTGTACTCAA
GCTGCAGCTT GGCAGCAGAT CAGCCCGATC AAGATCGCCA TCAATTTCTC GAGTGTACAA
TTTAGGTATT GTGAGGCGTT GCAAGAGCGT ATCGTCGATG TGTTGGTGCA AACGGGGCTT
CCTGCTAGCC AGCTGGAAAT GGAGGTGACC GAGAGTCTAC TGATAGAGCA AGATAATGCC
TTGATGAAGA TGCTCGCTTA TCTTAAGCAG CTCGGAGTAG GCCTATCTAT CGATGATTTC
GGTACCGGTT ATTCGGCGTT AAGTTATCTG CAGAAATTCT CATTTACTAA GCTAAAAATT
GATCGCGCCT TTATTAATAA TATGACCGTT TGTTCATCGG ATGCATCCTT GGTATCGGCG
ATACTGGCGA TGGCTAAATC GTTAAAGCTT AAGGTGGTTG CTGAGGGAAT TGAAAACGAT
GAGCAAGCGC TGTTTTTACA GCAGCACAAT TGTGAATTTG GTCAGGGCTA TCTGTTTAGT
CGTCCTGTGC CGGCTGCAGA GTTTACTCAG CTATTAATTC GCGACCAGAA TGAGGCCAGT
TTTACAGAAC AAATAGAACG AGCTGGTTAG
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| Protein sequence | MLTSNMKHFK WFNSKTAIII AGILLSGYLI LILTVTNLGQ SRLKESQNSE LNLRVSNYTE
NLSFFFDASE KNIANLSQKR DVNTYFSNLA AGMSLQYGLG SSLFSLTQMI ENFTRSNMMD
GQQIYTRVMI VGIGQTVIVN TRPEVAFDIN QLPLKEMETK DHKLQVVKGV EGTAIQLLQT
IYHQNKPVAI LVATLNTDLL IKLLSTQEHL ESGSCLTLVT PIGDILVWNS LQGCETETEI
GKTSYYGDNS RIIYFEKKVA STPLVLESWF KPVSEQDIFT SAWFIAGISL LALPVFLGLI
YLMRVNNANL VLQTQVELSS EQQQKLAMQN TQLHEEISKR KESESKLEYQ ATHDELTNLA
NRTHGMARLQ EMIGRSHVKQ TQILLLFIDL DNFKQVNDTV GHHAGDLLLK QASKRLLKSV
RTSDIVARLG GDEFLVIVPD IQHQDSAKLV ASSILSVFEK PFRIEQQEFF VSASIGMSVY
PKDGTNASTL LKRADTALYS VKDMGRNGFN FYDEQMNLDV QRSFALNVRL HQAVQQGELE
IYYQPILDLV SRKIVAAEAL MRWTDSELGF VSPEDFIPLA EKNGLIHRLG DIVLLEACTQ
AAAWQQISPI KIAINFSSVQ FRYCEALQER IVDVLVQTGL PASQLEMEVT ESLLIEQDNA
LMKMLAYLKQ LGVGLSIDDF GTGYSALSYL QKFSFTKLKI DRAFINNMTV CSSDASLVSA
ILAMAKSLKL KVVAEGIEND EQALFLQQHN CEFGQGYLFS RPVPAAEFTQ LLIRDQNEAS
FTEQIERAG
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