| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3599 |
|---|
| Symbol | |
|---|
| ID | 5663985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4391967 |
|---|
| End bp | 4393049 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641238261 |
|---|
| Product | periplasmic serine protease DegS |
|---|
| Protein accession | YP_001503447 |
|---|
| Protein GI | 157963413 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATTA AAGACACTCT TATATATGTC GGTAAAGCCA TTCTGTTTGG CCTTATCATG
GCTGCAGTTA TTATTTTTGT TTTGCCATTT ATTACAGGGC AGAGCTTAAC CAATGGCATC
ACTAGCCGTG TTTCGACAAG TAGCAACGAG CTATCTTTCT CGAAAGCTGT GCGCAGAGCT
GCCCCTGCCG TAGTAAATAT CTACAGCCTA AGTATCGATC AATCTAAACC GTTAAACCCT
GGGTCTCTTC AAGGTCTAGG TTCTGGCGTG ATAATGAGTA AAGAGGGCTA CATACTCACC
AACTACCACG TTATCAAGAA AGCTGATGAA ATTGTCGTTG CTTTGCAAGA TGGCCGTAAG
TTCACCTCTG AAGTGGTTGG CTCCGACCCT GAAACCGATT TAGCCGTACT CAAAGTTGAA
GGTGATAATC TCCCTGTTGT ACCAGTCAAT TTAGAGATCC CCGCACGTGT CGGTGATGTC
GTTCTAGCTA TTGGTAATCC ATATAACCTT GGGCAAACGA TTACCCAAGG CATTATCAGC
GCGACAGGAC GCAACGGTTT AAGCTCTGGT TATCTAGATT TCTTGCAAAC AGACGCGGCA
ATTAATGCCG GTAACTCAGG CGGCGCACTA ATAGATACCA CTGGCCAGCT TATTGGTATT
AATACCGCAG CCTTTCAGGT TGGCGGCGAA GGTGGTGGTC ACGGTATTAA CTTCGCGATT
CCAATTAAGC TAGCCCACAG CATTATGGGT AAACTAATAA AGAATGGTCG AGTGATCCGT
GGCGCCCTTG GTATTGGCGG TGAGCCCGTA GGTCCTGTTA TGGCACAAAT TTTAAACCTA
CCAGATCTAA CTGGTGTTGT AATTACTAGC ATTGACCGTA ACGGCCCGGC CGCACAGGCT
AAGCTACAAC CTCGAGATGT GATCACTAAG TATGAAGGTG AGTCAATTCC AGGTGTTGAG
ATGCTGATGG ATAGAATTGC CGAAACTACG CCAGGAAAGA AGGTGATGAT GACAGTTATT
CGAGATGGTA AATCTTACGA AGTGCCGGTA GTGATAGCCG AGAAGCCTGT TCATTATAAT
TAG
|
|---|
| Protein sequence | MIIKDTLIYV GKAILFGLIM AAVIIFVLPF ITGQSLTNGI TSRVSTSSNE LSFSKAVRRA
APAVVNIYSL SIDQSKPLNP GSLQGLGSGV IMSKEGYILT NYHVIKKADE IVVALQDGRK
FTSEVVGSDP ETDLAVLKVE GDNLPVVPVN LEIPARVGDV VLAIGNPYNL GQTITQGIIS
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTTGQLIGI NTAAFQVGGE GGGHGINFAI
PIKLAHSIMG KLIKNGRVIR GALGIGGEPV GPVMAQILNL PDLTGVVITS IDRNGPAAQA
KLQPRDVITK YEGESIPGVE MLMDRIAETT PGKKVMMTVI RDGKSYEVPV VIAEKPVHYN
|
|---|
| |