Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3480 |
Symbol | |
ID | 5663866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 4252242 |
End bp | 4253969 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641238136 |
Product | spermidine synthase |
Protein accession | YP_001503328 |
Protein GI | 157963294 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.212317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACCG ACTCAAATAA CTCCACCACC GAATCTAGCA ACCCAACCAT AGAATCAGGC AAATTAGGCT GGTTCGATGA TGTGCTTCTG CTTGGCATCA TGGCCGTGCT CGCTGGATGC GGCCTTATCT ATGAGTATCT ACTCTCTCAT TATGCCGGAC GCATTCTAGG CGCCCTCGAA GCTGCTATTT ACACCATGAT AGGTCTGATG ATCGTATCCA TGGGGCTCGG CGCCTTTGCC GCCCGCAAAA TTCGCTGCGC CTTTACTGGC TTTGCCGTGT TGGAACTTTG CGTCGCGCTT TGTGGATCGC TAGCAATCTT AATTACTGCA GCCGTTATCG GCTTTGGCCA GCAGCTTCCC CTTGTTATCG CCAATACTCT TGGCCTACCT GCGGATCAAC TGCCTGATGG TGGTTTTATT GGCACCTTGC AAAAGCTCAG TGAATATTTG CCTTATGTGT GGGGCGTGCT ACTAGGCCTG ATGATAGGCA TGGAGATCCC ACTGATCGCA CGCGTGCGCC AAGCACTATC AGAGGCGCAC TTAATGCACA ACGCTGGCAC CATCTATGGC GCTGATTATG TCGGTGCGGG TATCGGCGCT GCCATTTGGG TTGGTTTTAT GTTGGCAATT GATATTCAGC TAGCGGCGGC GCTGACTGCC AGTTTTAATT TGTTAGCCGG CTTTATCTTT ATTTGGCGCT TCTGGCATCA AATTCGCCAT GTAAAACTGC TCCTCGTTGG CCACTTTATC GCAACGGGGA TCTTAGTGTT ATTGGCGCTA CACGGGCCAT CATGGGAACA GAGCTTTAAT AACCTGCTCT ATAAAGACAA GGTGGTTTAT GCCAAGGCGA CTCGCTTTCA ACAGCTGACC TTTACTGAGC GTCTTAGAGG CAACGGTCTT GGCCCTGTGC ATTCGCTGTA TATCAACGGA CGATTGCAGT TCTCCAGTAG CGATGAGCAT ATCTATCACT CTTTCTTGGT ACACCCGACC ATGGCGGCTA GCGCACGTCA CGACAAGGTG TTAATCATTG GCGGCGGCGA TGGCTTAGGA CTTACCCAAG TGTTGCAATG GCAACCAGAG CAGGTGACGC TAATGGATCT TGATAAGGAA CTGGTTGAGC TGTTTAAGCA ACCCGCTAGC GATATGCCCG ATCATTTAAG CCGAGCACTA CTCGCACTCA ACCAAGATGC GCTAAACGAC CCTCGAGTAA GAATTATGTA TGAGGATGCC TTTAACGGAG TTGATAAGTT ATTAGCTAAG GAAGAGAAGT TCGATGTCAT TATTGTCGAT CTGCCCGACC CGAGTCATCC AGATCTTAAC AAGCTGTATT CCGATGCCTT CTATTTAAAG CTCAAGGAAC TAATGAGTAA TGACGCTGCC TTAACCATAC AGTCGACGTC ACCTTATCAC GCCCCTAACG CCTTTATTTC GGTAGGTAAG ACCTTGGAGC TTGCTGGCTT TAGAGTCGAT CAGTACCACC ATAACGTACC CAGTTTTGGT GAATGGGGCT GGAGCATTGC TACCTTAGGT GGAAAAAGTG CCCGCACTAG GCTACAAAGT CTGCAGCAGC TGCCTGTCGA TGACCCTTGG TTAACTCCAG GTCTAATCCA TGCAGCCTTT GAGTTTCCGG GGAATTTTTA CCAGAACAAA GCAGAAATTA AGCCCAATGT TTTAGGTTCA AGCCAGCTGT ATCAATATCA TCAGCAGGCT TGGTTAGAAA ATCAGTAG
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Protein sequence | MQTDSNNSTT ESSNPTIESG KLGWFDDVLL LGIMAVLAGC GLIYEYLLSH YAGRILGALE AAIYTMIGLM IVSMGLGAFA ARKIRCAFTG FAVLELCVAL CGSLAILITA AVIGFGQQLP LVIANTLGLP ADQLPDGGFI GTLQKLSEYL PYVWGVLLGL MIGMEIPLIA RVRQALSEAH LMHNAGTIYG ADYVGAGIGA AIWVGFMLAI DIQLAAALTA SFNLLAGFIF IWRFWHQIRH VKLLLVGHFI ATGILVLLAL HGPSWEQSFN NLLYKDKVVY AKATRFQQLT FTERLRGNGL GPVHSLYING RLQFSSSDEH IYHSFLVHPT MAASARHDKV LIIGGGDGLG LTQVLQWQPE QVTLMDLDKE LVELFKQPAS DMPDHLSRAL LALNQDALND PRVRIMYEDA FNGVDKLLAK EEKFDVIIVD LPDPSHPDLN KLYSDAFYLK LKELMSNDAA LTIQSTSPYH APNAFISVGK TLELAGFRVD QYHHNVPSFG EWGWSIATLG GKSARTRLQS LQQLPVDDPW LTPGLIHAAF EFPGNFYQNK AEIKPNVLGS SQLYQYHQQA WLENQ
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