| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3342 |
|---|
| Symbol | |
|---|
| ID | 5663730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4083472 |
|---|
| End bp | 4084650 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641238000 |
|---|
| Product | trimethylamine-N-oxide reductase c-type cytochrome TorC |
|---|
| Protein accession | YP_001503192 |
|---|
| Protein GI | 157963158 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR02162] trimethylamine-N-oxide reductase c-type cytochrome TorC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.688416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATGGT TACTTAACAT CTGGCGCACA CTGACTAAAC CAGCTAAATA CCTAACCTTA
GGAAGTATTG GTATTTCTGC CTTTCTAATG GGAATTATCT TCTGGGGTGG CTTTAACACT
GCACTTGAAG CAACGAATAC AGAAGAGTTC TGTATCAGCT GTCACAGTAT GGAAAGCAAG
CCTTACCAAG AGCTCCAACA GACTGTACAT TTTTCAAACC ATTCAGGTGT GCGTGCAACT
TGCCCAGACT GTCACGTACC GCATAACTAT GGCCGTAAGA TAGCGCGTAA GTTAGAAGCT
TCTCACGACG TATACGGTTG GTTGTTTAAC ACCGTCAATA CACCTGAGAA GTTTGAAGCT
AAGCGTCTTG AAATGGCAAG CCGTGAGTGG AAACGTTTTG ACCGTGATAA GTCTGCAGCA
TGTAAAAACT GTCACCAGTA CGACTCTATG AAGTGGGACA GCATGTCTAA GCTTGCAGTT
AAGCAAATGA AGCGCGCTGC TGAGTTAGAT CAAAGCTGTG TGGATTGCCA CAAAGGTATT
GCTCACAAGC TACCAGAAAT GGGTACCGCT CGTGCTCCAG AGTTGATTGC CGAAGTGGGT
CGTGGCGTAA GTGGTGTTCA AGTGGGTCAA ACTTACTTCA CAGCATTAAC CAAGCCATTA
TTCTTCAACG ATAAAACTGA CGTTGAAGCC GGCACATTAA ACATTGCGAC TAAGGTGAAA
ATCTTAGAAG TAAAAGGTAA CCGTGCCAAG ATTGGTATCG ATGGCTGGAG AAAGAAAATC
GGTGCAGGCC GCGTGATCTA CTATGACTTT GGCTTAAACA TTCTTTCGGC TCAGTTAACT
AAAGACGCTG CGCTAGAAGA AGGTGTGATT AAGACATTCG AAGAGAAAGA AGATCCAATG
ACAGGCCTTA AGTGGCAGCG TGTAGAAGCG GACATTTGGA CGGAAACTGA CTACTTGCTA
ACGGATCTAC AACCACTATG GGATTACGCT CGTAGTACAT ACAGCACAGC ATGTAGCGTA
TGTCACACCC AGCCAGCTGA AGCACACTTT GACGCCAACA CATGGCCAGG TATGTTCCAA
GGCATGATCG CATTCGTCAA CATGGATCAA GATACCCAAG CTTTGGTACA GAAATATTTA
CAAGAGCATT CATCAACTTT CGATAAGTCG GCTCACTAA
|
|---|
| Protein sequence | MRWLLNIWRT LTKPAKYLTL GSIGISAFLM GIIFWGGFNT ALEATNTEEF CISCHSMESK
PYQELQQTVH FSNHSGVRAT CPDCHVPHNY GRKIARKLEA SHDVYGWLFN TVNTPEKFEA
KRLEMASREW KRFDRDKSAA CKNCHQYDSM KWDSMSKLAV KQMKRAAELD QSCVDCHKGI
AHKLPEMGTA RAPELIAEVG RGVSGVQVGQ TYFTALTKPL FFNDKTDVEA GTLNIATKVK
ILEVKGNRAK IGIDGWRKKI GAGRVIYYDF GLNILSAQLT KDAALEEGVI KTFEEKEDPM
TGLKWQRVEA DIWTETDYLL TDLQPLWDYA RSTYSTACSV CHTQPAEAHF DANTWPGMFQ
GMIAFVNMDQ DTQALVQKYL QEHSSTFDKS AH
|
|---|
| |