| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3236 |
|---|
| Symbol | |
|---|
| ID | 5663625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3968235 |
|---|
| End bp | 3969122 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237895 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_001503087 |
|---|
| Protein GI | 157963053 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTACAAA AATCAAAACT TAGCCAATTT TTCAAATCGG CTTCAGTGGT AAAGCTACTA
CCGCTTGCAC TCATAATCAT CGCCATCTTT AACTCCTACT TCATCGTTAT TGAAGGTCAT
GTCGGCGTAG TGAAACGCTT TGGCGAAGCC AAGGATCAAC AAAATCCTGG TTTACACTTT
AAGATCCCCT TTATTGAAAC CGTCGAGATG ATTGAAGTGC GTACCCGTAA GAATGCCGAG
AAAATGGCCT CTAGTACTAA AGAACAGATG CCAGTAACAA TTGAGGTTTC GGTTAACTGG
ACAGTTAATA AAGAAGCCGC GTTAGAGTTA TTTAAACGTT ACGGCGGCCT TACTCAATTT
GAACAACGCA TTCTGGACCC GCGTTTTCGC TCGGCAACCA AAGACACTAT CCCTCAATTT
GAAGCAGAGC AGCTTATACA AGACCGAGCC AGTGCAATTC AGGGCATCGA GCGTCGCTTA
GCCGAAGAAA TGGAAGGCTT CCCTGTTGTG GTCGATAACA TTCAAATTGA AAACATTATT
CTGCCGCAAA AATACATTAA CTCGATTGAA ATCAAGCAGA CAGAAAAGAA CCTTGCTGCC
GCTGAGGAGC ATAAGCTTGA GCGTCAACGC CTTGAAGCAT TAAGAGCAGT AAACACCGCC
GATGCACGAG CGAAAGGCAT TCTTAAAGTG GCTGAGGCCG AAGCGCAATC CATACTGCTA
AAAGGTAAAG CTGAGGCACA GGCAATTGAA GCCAAAGCTA AGGCACTTAA GAACAATCCA
TTGATTGTTA AACTTACTGA AGCACAAGCA TGGGACGGCA GATTACCTAT GACTATGATG
GGCGAAGGCG CGATGCCCAT TATGGATCTT CGCGACGCAA GCAAGTAA
|
|---|
| Protein sequence | MLQKSKLSQF FKSASVVKLL PLALIIIAIF NSYFIVIEGH VGVVKRFGEA KDQQNPGLHF
KIPFIETVEM IEVRTRKNAE KMASSTKEQM PVTIEVSVNW TVNKEAALEL FKRYGGLTQF
EQRILDPRFR SATKDTIPQF EAEQLIQDRA SAIQGIERRL AEEMEGFPVV VDNIQIENII
LPQKYINSIE IKQTEKNLAA AEEHKLERQR LEALRAVNTA DARAKGILKV AEAEAQSILL
KGKAEAQAIE AKAKALKNNP LIVKLTEAQA WDGRLPMTMM GEGAMPIMDL RDASK
|
|---|
| |