Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3056 |
Symbol | |
ID | 5663446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 3749052 |
End bp | 3751091 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641237695 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001502908 |
Protein GI | 157962874 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.029022 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAGTT TCAAATCACT GACATGGAAG CAGACTATCT TAGTGGTTTC TTCCACACTT TTTTTCGCCG TTGTGATCTT TTTTATTGAG ATATCTCTCC TCGTTATCGA TGCTCGCCAA GAGCTTTCGG AAAGCCAACA AGAACTCGTC GACTCAGTTG AACAGCCAGC GACCAATGCG ATCTGGGCAT TAGATGATTT ACGTGCTGAA CAAACCATTC AAGGGATCTT AAAAGTAGAG CATGTAGGCT CGGCGATATT AAAACTTGAA GATGGTAGCC GTTTCGTATC AGTTAATAAT GGTGCCCCAT CCGTTAATCC TGAGCTTTTT ACCTCAATCA GTGCCAAACT CTTTGGCGAC CTAAAACAGA TCTCTCGCTC GCTGTACCGC CCTTTTTATA CCGATGCTAA TGGTAATAAA GAACTTATCG GCAGCCTAAC CGTTTTCTAT TACACTCAAG AGCTAACCAG CTCTTTATTT TCTAGCCTTA GATTCAGCCT TTGGGCAACT CTTGCGAGAG CCTTCCTGCT AACGCTTGTT CTGTCTATTG TGTTCCATCG TTTTCTTACC CAGCCGATAG CGAAAATAAG CGAAGCTATC GACAGAATCG ATCCCGAATC CCCTGCGAAT CACTTGCTTC CACCTGACCG TGCTCATAAT GATGACGAAC TCGGGGCGGT TATCTCCAAG CTCAATCAGA TCTTGATTCA ATTCGACACG ACTCAGACTA AGCTACGCAA GATGGCGACA CGGGACCCCC TGACTGAATT GCCTAATCGC ACTTTATTGC TTGAAACTAT TGCGGTTACC ATCCAAAGAG CAAAGACCAA ACAGAGACGT TTCAGCTTGC TGTTCATTGA CCTAGACCGT TTTAAAAACG TTAACGATTC ATTGGGACAT GAAGTTGGCG ACCAATTTTT AATACGAGTC GCGCGTAACC TAGAGTTAAC CGTTGGCCAG ATAGGTACGG TCGCAAGGCT TGGAGGCGAT GAATTTGTGG TATTAGCGGA TGGTTTAGAC TCCCCCACAA AAGCGGTCGA GTTGGTCGAT AAGTTACTGG TTCAACTGAA CACGCCTATG CAACTCAATG AGCATACTGT GCACCCTGCA GCCTCAATCG GTATCGCAAT CTATCCCGAT GACGGCCTTC GAGCCGAAGA CCTTATTCGC CATGCCGATA TCGCCATGTA CAGCGCAAAA GCCGCTGGCT CAAACCAATG GGCATTCTTT AAACCTCAAA TGACCGAACG TGCTTCAGTA CGTTTAAGAA CTGAGGCTTC GTTACATGAT GCGCTTGAGA ACAATGAATT CATATTACAT TTTCAGCCAA AACTAGATAT AGAAACCGGT GCAGTGGTTG GTTGCGAAGC CCTTATCCGC TGGCAAAAGG ATGGCCGTTT AATAAGTCCA GCCTCTTTTA TTCCTGTGGC GGAAGAAACT GGTATGATTA TTCAAATAGG CCAATGGGTT GTCGAGCAAA GTTGCAAAAC CATCAAAGAC TGGAAAACTC GCTATAACTT TTCGGTGCCA ATTGCCATTA ATGTCTCATC ACAGCAGTTT TTAGATGCCA GCCTAGTCCC CGATATAAAA CAGGCGGCAC TGCGTTATCA AGTAGCTCCT CAATCACTGG AAATAGAGAT CACTGAAACT TCTCTGATGA ATGACATAGA GTCCGCAATT ATAAAGCTTC AACAGTTAAA GTCCGCAGGT TTTGGCATTG CTGTAGACGA TTTTGGTACA GGTTATTCTT CTCTTTCTTA CCTACGGCGT CTGCCAATAA GCACCATGAA GATTGATCGT GGTTTTGTAT CTGATCTGCC TGAAGAGAGT GCAATCGCAT CGACTATTTT AATGCTTGGC AAGCAACTTG ATTTAAACAT TGTCGCCGAG GGAGTTGAGA ATGAGCAGCA GCTTGCTTGG TTACAAAACC AAGGCTGTCA GATAGGACAA GGGTTTTACT TTAGTAAGCC TCTACCAATA GAATCGTTTG AAGCCAAGTA CATTGCTCCA AATCGTAACA CCATAAAAAC CAGCAGCTAG
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Protein sequence | MDSFKSLTWK QTILVVSSTL FFAVVIFFIE ISLLVIDARQ ELSESQQELV DSVEQPATNA IWALDDLRAE QTIQGILKVE HVGSAILKLE DGSRFVSVNN GAPSVNPELF TSISAKLFGD LKQISRSLYR PFYTDANGNK ELIGSLTVFY YTQELTSSLF SSLRFSLWAT LARAFLLTLV LSIVFHRFLT QPIAKISEAI DRIDPESPAN HLLPPDRAHN DDELGAVISK LNQILIQFDT TQTKLRKMAT RDPLTELPNR TLLLETIAVT IQRAKTKQRR FSLLFIDLDR FKNVNDSLGH EVGDQFLIRV ARNLELTVGQ IGTVARLGGD EFVVLADGLD SPTKAVELVD KLLVQLNTPM QLNEHTVHPA ASIGIAIYPD DGLRAEDLIR HADIAMYSAK AAGSNQWAFF KPQMTERASV RLRTEASLHD ALENNEFILH FQPKLDIETG AVVGCEALIR WQKDGRLISP ASFIPVAEET GMIIQIGQWV VEQSCKTIKD WKTRYNFSVP IAINVSSQQF LDASLVPDIK QAALRYQVAP QSLEIEITET SLMNDIESAI IKLQQLKSAG FGIAVDDFGT GYSSLSYLRR LPISTMKIDR GFVSDLPEES AIASTILMLG KQLDLNIVAE GVENEQQLAW LQNQGCQIGQ GFYFSKPLPI ESFEAKYIAP NRNTIKTSS
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