| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3027 |
|---|
| Symbol | |
|---|
| ID | 5663417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3711580 |
|---|
| End bp | 3712824 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641237666 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001502879 |
|---|
| Protein GI | 157962845 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTGT CATTTTCATC TCTCCCCTTA GGTGACAAAC TTCAACGCGT GCTTGCGCAA
AAAGGCTACC AACAGCCAAC GGCCATTCAA GCCGAGGCTA TCCCGGTTAT TTTAAGCGGT
CAAGATATCA TGGCGAGCGC GCAAACTGGG ACAGGTAAAA CCGCCGCATT CACCTTGCCA
CTACTGCAAC GCTTGCTCGA TAGAAGCGCC GAGGATTGTT TGACTAGCCG ACTGCCCACT
GCGCTTATCT TAGTGCCAAC GCGAGAGCTC GCAGTGCAAG TGAACGGCAA TGTTAGCCAG
TATGCGGTTA ATACAGATAT TGCTAGCGTG GTGATCTATG GTGGTGTGAG TATTGATGCT
CAGGCAACAA AATTAGCTGC GGGCTGCGAT ATTATTGTCG CGACACCGGG ACGCTTGCTA
GATCACCTTC GCCGTGGCTC ATTGAACCTA TCGAGTATTG ACTACTTAGT ATTCGATGAA
GCCGATCGCA TGCTAGACAT GGGTTTTATG GATGAAATTA GTGCCATCTT AACGCGTCTG
CCGGCTAAGC GTCAGACCTC GCTATTTTCG GCCACCTTTA GCACGGCAAT TTATGATTTA
AGTAAGAAGC TATTGCATAA ACCTGCACGA ATAGAGGTCG ATAAAGCCAA TAGCGCTGCA
GACAGTGTTG AGCAGATAGT CTATGCCGTA GATAGTGATC GTAAGACAGA GTTGATTTGT
CATCTAATCA AGAAGTATGA CTGGCATCAG GTGCTTATTT TTAGCCGCAA GAAGCAGACC
GCCGATACTA TTGCACAAAA GATGTTAGCG ACCGGAATTG AGACTAAGGC GTTTCATGGT
GACTTAGGCC AAGGTGCTCG AGAACAGGTG CTCAATGATT TTAAGCAGGG CAAGATTAAA
GCGCTTGTGG CTACCGATGT AGCAGCTAGA GGGTTAGATA TTGTTGAGCT TAAATACGTG
GTCAACTATG AGATCCCCTT TATTGCCGAA GATTACATCC ACCGGATCGG CCGTACTGGG
CGCGCAGGTA GTGTGGGCAA AGCGGTAACT CTATATAGTG AAGATGATGC CTTACTGCTT
GAAGAGGTGG AGACGGTGTT AGATAAACGC TTGGCACCGC AATGGCTGCC AGGTTTTGAG
CCGGACTTAA CCAAGAGCGA ACCTGTTAGT CGAAAGAATA GCAAAACGGC TCAGCGTCAA
AGAGCTAAGA GGCGCGCCTT GGGAGGCAGT AATCGCCGCC GATAA
|
|---|
| Protein sequence | MSVSFSSLPL GDKLQRVLAQ KGYQQPTAIQ AEAIPVILSG QDIMASAQTG TGKTAAFTLP
LLQRLLDRSA EDCLTSRLPT ALILVPTREL AVQVNGNVSQ YAVNTDIASV VIYGGVSIDA
QATKLAAGCD IIVATPGRLL DHLRRGSLNL SSIDYLVFDE ADRMLDMGFM DEISAILTRL
PAKRQTSLFS ATFSTAIYDL SKKLLHKPAR IEVDKANSAA DSVEQIVYAV DSDRKTELIC
HLIKKYDWHQ VLIFSRKKQT ADTIAQKMLA TGIETKAFHG DLGQGAREQV LNDFKQGKIK
ALVATDVAAR GLDIVELKYV VNYEIPFIAE DYIHRIGRTG RAGSVGKAVT LYSEDDALLL
EEVETVLDKR LAPQWLPGFE PDLTKSEPVS RKNSKTAQRQ RAKRRALGGS NRRR
|
|---|
| |