| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3023 |
|---|
| Symbol | |
|---|
| ID | 5663413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3705427 |
|---|
| End bp | 3706971 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237662 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_001502875 |
|---|
| Protein GI | 157962841 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA ACCAAGCAAA CTTAAGCAAT CAAGAAGTTA AGTTAATCCC TAGCGATCAA
CTCATCTCCA CCACGGATAG GCGTGGCGTG ATCACCTACG TTAACCAAAG GTTTATTGAA
GTATCAGGTT TCGAGCAAGC AGAACTGATT GGACATAATC ACAATATAGT ACGTCATCCA
GATATGCCCA AGGCCGCATT TGAAGAGATG TGGGGCAAAC TAAAACTAGG GCTTTCTTGG
CGCGGAGTGG TCAAGAATCG TTGTAAAGAC GGCAAGTACT ATTGGGTCGA TGCCTTCGTC
TCGCCCCTGT TTGAAAGAGG TGAGCTCATC GGGTATCAAT CAGTCCGCAT GGCTGCAAGC
CCTCAACTCA CCGATAAAGC CTCTAAAGTC TACCAGCGCC TAAATCAGGG TAAACGTGTT
GATGATCCCA TCAGCTTAGC CAATAAAAGA TTGTTGTCAG CAATTTGTGT CTGCACTGGG
CTATTGATTG CTGGTGCGAT ATGGGGATGG ACAGTCATCA TTGCTGGCAT CATTCTAATG
GGGATCAATC TTGCCATCTT TTACGATGAA GCTTTTCGAG TGCCTGAAAA ACTGATGAGA
ATGAAGCAAA AATATGACTC GGTCAGTCGC TTTATCTATT GTGGGCGCGA TACCTCTTCT
CTATTAGATT TCCAGTTAAT GATGAAAGAC GCCAAGCTAC AAGGGGTACT TGGACGCTCC
CAAGATAATG CCGAGCATAT TGAAGATATT GCCAACCAAC TGATTGCCGC TACAGAGCAA
ACCCATACTG GCTTAAACAT TGAAAAACAA CAGATAGAGC AGATGGCCAG TGCCACCGAA
GAGATGGGAA CCACCATCAG CGAAGTCGCT AGAAACACCC AATCCACCTC AGACAGCATT
CAACATAGCT ATCAGTTTTG CCAAGAGAGT CGTGAGAAAA TGCAGCAAAA TGCCGCAGGT
ATTCATCAGC TGTCAGATTC TGTTGCCGAA GCCGCAGCTA ACGCACTCTT ACTGAATAAA
GAGGCCGAGC GAGTCGCCAG CGCGATGTCA GAAATCGATT CAATTGCCGA GCAAACCAAC
TTGCTCGCAC TCAATGCAGC TATCGAAGCC GCTCGAGCTG GAGAGCAAGG ACGAGGGTTT
GCGGTTGTCG CCGATGAAGT AAGAGCACTA TCGAGCCGTA CTCAGCAATC AACCACTAGC
ATTTCTGAGA GTGTTGATAA AATGTTTAGC ATGCTCACGC TCTGGTCTAA GCAGATGAAT
CACAGTAAAT CCCAAGCATT ATTATGCAGC AAAGATGCCG AAATCTCCGT ACAAAAGGTG
GATACCATCT ATCAATCGAT GAAGAATATT CAACAATTAG CCATCCAAAA TGCGGTTGCG
GCAGAACAAC AAACCTTAGT TGTGGCCGAG ATAAACCAAA ATATCAGTCA AATTAGCCAA
GCATCGAGTG AGAATCTATG CGCCGTGAAC TCGGTTGAGG CCTCAGTGAA GCAGTTAATA
ATTAATGCAG AGAAAGCAAA ATCTTTGAGG AAAACATTTA GTTAA
|
|---|
| Protein sequence | MTNNQANLSN QEVKLIPSDQ LISTTDRRGV ITYVNQRFIE VSGFEQAELI GHNHNIVRHP
DMPKAAFEEM WGKLKLGLSW RGVVKNRCKD GKYYWVDAFV SPLFERGELI GYQSVRMAAS
PQLTDKASKV YQRLNQGKRV DDPISLANKR LLSAICVCTG LLIAGAIWGW TVIIAGIILM
GINLAIFYDE AFRVPEKLMR MKQKYDSVSR FIYCGRDTSS LLDFQLMMKD AKLQGVLGRS
QDNAEHIEDI ANQLIAATEQ THTGLNIEKQ QIEQMASATE EMGTTISEVA RNTQSTSDSI
QHSYQFCQES REKMQQNAAG IHQLSDSVAE AAANALLLNK EAERVASAMS EIDSIAEQTN
LLALNAAIEA ARAGEQGRGF AVVADEVRAL SSRTQQSTTS ISESVDKMFS MLTLWSKQMN
HSKSQALLCS KDAEISVQKV DTIYQSMKNI QQLAIQNAVA AEQQTLVVAE INQNISQISQ
ASSENLCAVN SVEASVKQLI INAEKAKSLR KTFS
|
|---|
| |