| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2888 |
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| Symbol | dapD |
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| ID | 5663279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3528009 |
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| End bp | 3528833 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237528 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001502741 |
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| Protein GI | 157962707 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG AATTGAGGCG GCTTTTGAAG CGCGCGCAGA GATAACTCCG
GCAACAGTTG AGCCAAGTGT TCGCGCTGAT GTTGAAAAAG CGATTGCCAT GTTAGACACT
GGCGAAGCGA GAGTTGCTGA AAAAATTAAT GGCGAATGGC ATGTTCACCA GTGGCTGAAA
AAAGCGGTAC TACTTTCATT CCGCATTTTC GACAACGGCG TAATTGAAGG CGCAGAAACC
AAATACTTCG ACAAAGTACC AATGAAGTTT GCTGATTACG ACGAAGCGCG TTTCCGTAAA
GAAGCTATTC GTGTTGTACC ACCAGCAGCG GTACGTAAGG GCTCATTTAT TGGCAAGAAC
ACAGTGCTAA TGCCATCTTA CGTTAACCTT GGTGCTTTTG TTGATGAAGG CACTATGGTT
GATACTTGGG CGACTGTTGG CTCTTGTGCT CAAATTGGTA AGAATGTTCA CTTATCTGGC
GGTGTCGGGA TCGGTGGCGT TTTAGAGCCT CTACAAGCCG GCCCTACCAT TATTGAAGAT
AACTGTTTCA TCGGTGCACG CTCTGAAATC GTTGAAGGCG TTATCGTTGA AGAAGGCAGC
GTTATCTCTA TGGGCGTATA TATCGGCCAA AGCACACGCA TTTTTGACCG TGAAACAGGC
GAAGTTCATT ATGGCCGTGT TCCAGCAGGT TCTGTCGTTG TGGCCGGTAA CCTACCCTCT
AAGTGTGGTA CTTACAGCCT ATACGCCGCC ATTATCGTTA AGAAAGTTGA TGCAAAAACC
CGCGGCAAAG TGGGTATTAA CGAGCTATTA CGTATCGTAG ACTAA
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| Protein sequence | MEALRQRIEA AFEARAEITP ATVEPSVRAD VEKAIAMLDT GEARVAEKIN GEWHVHQWLK
KAVLLSFRIF DNGVIEGAET KYFDKVPMKF ADYDEARFRK EAIRVVPPAA VRKGSFIGKN
TVLMPSYVNL GAFVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVIVEEGS VISMGVYIGQ STRIFDRETG EVHYGRVPAG SVVVAGNLPS
KCGTYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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