Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2807 |
Symbol | |
ID | 5663199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3426311 |
End bp | 3429436 |
Gene Length | 3126 bp |
Protein Length | 1041 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641237448 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001502661 |
Protein GI | 157962627 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0699119 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCGCATT TTTTTATTTC TCGACCTGTT TTTGCATGGG TTATTGCTAT TTTAATTAGC ATCGCAGGCG TGATTGCCAT TCCTAAGTTG GCTGTCGAGC GTTTTCCTAG CGTTGCGCCG CCGAGTATTG GTTTGTATCT ATCCTATCCT GGTGCCAGTC CACAAACCAT TAATGACAGT GTTGTGACCT TGATTGAGCG GGAGATCTCA GGGATTAATG GTCTGCTTTA TTTTAGCTCC TCGTCAGATG CTAGCGGCAG CGCCTCAATC ACGGTGACCT TTGAAAATGG TACCGATCCT GAGATGGCTC AGGTTGAGAT CCAAAACAAG ATCAGGGCGA TTGAGCCAAG ACTACCTTTA GCGGTTCGTC AAATCGGCAT CACGGTGGAA ACAACTTCTT CAAATAACCT GATGTATTTA GGACTTATCT CACCGAGTGG TGATTACTCA GAGCAGCAAC TGAGTGACTA CATGGTGCGA AATATCGTTG AGGAGATAAA GCGCGTGCCC GGTGTGGGAC GAGTACAGAT GTATGGCGCT GAGTTTGCGA TGCGGATCTG GGTCGACCCG GTGGCGTTGA CAGGCTATAA CTTAACGATG GAAGATGTGA CATTAGCCAT TGCAGAGCAA AATGTGCAGA TCTCTCCTGG CAAAGTGGGT GACTCTCCGA CATCTGGCGG CCAAATGACG GTGCACTCTC TAACCGCCCA AGGGCAATTA GAAACCCCTG AGCAATTTAG AGCCATTGTG CTGCGTTCCA ATATTGACGC TGGCATGGTC CTATTAGGGG ATGTAGCTAA AGTTGAGCTT GGGGCACAAA ATTACCTGTT TAGTAATCGG GAAAATGGTC AGCAGTCGAC ATCTGCTGCG ATTCAGCTAT CGCCTGGAGC GAATGCGATT GCGACCTCGC AAGGGATCAG AGACCGATTG GCTGAGCTTA AGCTTGCCAT GCCCAGCAAT ATGGACTATT CGATTACCTC CGATGCCGCT ATCTTTGCCA AGATCTCGAT TCAAAAAGTG ATCGTGACAC TGCTCGAAGC AATGGTGTTG GTTTTTTTAG TCATGTATCT CTTTTTACAG AAAATTCGCT ATACCCTTAT TCCTGCCATT GTTGCACCTA TTGCACTGTT AGGTACATTT GCAGTGATGT GGCTAATGGG CTTTTCCATC AATGTGTTCA CTATGTTTGG TATGGTGTTG GCTATCGGTA TTATTGTTGA CGATGCCATC GTAGTGGTTG AAAACGTTGA ACGAGTAATG GCTGAAACAG GCTTGCCACC CAAAGCGGCC ACAGAGCAGG CGATGAAAAG CATCTATAGC GCAGTTATTG GGATCACGGC TGTGTTGTCT GCGGTATTTA TACCTATGGC ATTTGCATCG GGTTCGGTAG GCACAATTTT CCAGCAGTTC TCGCTTGCAA TGGCGGTGTC GATTTTATTT TCGGCCTTCT TAGCCCTAAC ATTGACGCCA GCTTTGTGTG CAACTCTATT AAAGCCTTTG ACAGAGCATG ACCATAAAAG CGTTGGTTTT TTTGGCTGGT TTAATCGTAA CTTCCACAAT TTTACACAAA AAGTGACGGC TGGTGTTGCC CATCTCGTTA AACGAACGGG CAGAGTGATG GCAGTTTACA TCGTACTCGT GGTGGCATGT ATTTATAGCT TTACTCTAGT GCCGAGCACC TTTTTACCCG AAGAAGATCA AGGCTACTTT ATGACGTCTA TCCAGCTGCC GCCTGATGCG ACGGTAGAGC GGACTATGGA TGTGGTGAGT AAAATGGAGG CGTTTACTTT AGGTAGGGAG GCCGTTGATG CGAGCATGAG TATTCTTGGT TTCAGTTTTA GTGGTACAGG TTCTGGTTCA GCCTTTGGAA TTACGACCTT AAAAGACTGG CAACAACGTG GTGGTAGCTC TACACAACAA GAAGTGGCAG CGTTAAGTGA TTATTTAAGT GATTTAACGG AAGGAGAAAT ATTTAGTGTG TTACCTGCTG CGATAGATGG CTTGGGGAGC TCATCCAATT TATCTTTCCA ATTACAAGAC AGTGGTAATG CAGGTTACGA GCGCTTCCAA TTGATCCAAA AGGAATTCCT TGAGCAGGCA TATGCCAGTG AAAAGCTATC ATCTGTGTTC TATGAGGCGC TGCCAGAAAC CAGTGGCATA CATCTTAATA TTGACCGCGC CAAAGCACGG GCGCTAGGGG TGCCTTTTAA CGCGATTAGC GAAACTATCT CTACTGCAAT GGGCTCAAAT TACGTTAATG ATTTTCCTAA TAATGGTCGT TTGCAACAGG TGATTGTTCA AGTTCAAGCT GAGTCAAGAA TGCAACTTGA GGATATATTG CAACTGGCTA TCCGTAATGA GCAAGGCGGC ACGGTTTATC TTTCTGAATT TGTCACCCCT GTGTGGCAAA TGGCGCCGCA GCAATTGACA CGATTTAATG GTTTATTGGC CGTGGCAGTA TCGGCGTCGC CAGCAGCAGG ATTTTCAACT GGAGAGGGGA TGCAAGAGGT AGAACGCATT GCTGCATCTT TGCCTACGGC TGCGGGAGTT GAGTGGACGG GGCTGTCACT GCAAGAGAAA CAAGCTGAGT CTCAAACAGT GTGGTTATTG CTGTTCTCTA TGCTGGTTAT TTTCTTAGTA TTGGCAGCGT TATATGAAAG TTGGTCTATC CCTTTAGCGG TTATTTTGGT AGTGCCGTTA GGGATTATTG GGGCAATTGC TTCTGTGATG CTAAGTGGCG CTGCCAATGA CGTGTTTTTT AAAGTGGGTT TAGTGACCAT CATTGGCCTA TCTGCAAAAA ATGCCATTCT AATTGTTGAA TTTGCTAAGC AAGCTTTGGC TGAAGGAAGT AGCCTCGTCG ACTCGGTATT GCTAGCGACT AAGCAAAGAC TTAGGCCTAT TTTGATGACG TCTTTGGCCT TTAGTTGCGG CATCATTCCA CTCTATCTAG CCAGTGGACC CAGCTCAGAG ATCCAAAATT CGATTGGTAC TGGTGTGCTT GGTGGCATGT TTACCGGCAC GGTATTTGCC GTGTTATTTG TGCCGGTATT TTTTGTGTTT ATTTGCCAGT TTTTAGAGCG AGTTAGGCGT AACCCCTTTT CATCAAAACT AGCAGATAAA GGCTAA
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Protein sequence | MSHFFISRPV FAWVIAILIS IAGVIAIPKL AVERFPSVAP PSIGLYLSYP GASPQTINDS VVTLIEREIS GINGLLYFSS SSDASGSASI TVTFENGTDP EMAQVEIQNK IRAIEPRLPL AVRQIGITVE TTSSNNLMYL GLISPSGDYS EQQLSDYMVR NIVEEIKRVP GVGRVQMYGA EFAMRIWVDP VALTGYNLTM EDVTLAIAEQ NVQISPGKVG DSPTSGGQMT VHSLTAQGQL ETPEQFRAIV LRSNIDAGMV LLGDVAKVEL GAQNYLFSNR ENGQQSTSAA IQLSPGANAI ATSQGIRDRL AELKLAMPSN MDYSITSDAA IFAKISIQKV IVTLLEAMVL VFLVMYLFLQ KIRYTLIPAI VAPIALLGTF AVMWLMGFSI NVFTMFGMVL AIGIIVDDAI VVVENVERVM AETGLPPKAA TEQAMKSIYS AVIGITAVLS AVFIPMAFAS GSVGTIFQQF SLAMAVSILF SAFLALTLTP ALCATLLKPL TEHDHKSVGF FGWFNRNFHN FTQKVTAGVA HLVKRTGRVM AVYIVLVVAC IYSFTLVPST FLPEEDQGYF MTSIQLPPDA TVERTMDVVS KMEAFTLGRE AVDASMSILG FSFSGTGSGS AFGITTLKDW QQRGGSSTQQ EVAALSDYLS DLTEGEIFSV LPAAIDGLGS SSNLSFQLQD SGNAGYERFQ LIQKEFLEQA YASEKLSSVF YEALPETSGI HLNIDRAKAR ALGVPFNAIS ETISTAMGSN YVNDFPNNGR LQQVIVQVQA ESRMQLEDIL QLAIRNEQGG TVYLSEFVTP VWQMAPQQLT RFNGLLAVAV SASPAAGFST GEGMQEVERI AASLPTAAGV EWTGLSLQEK QAESQTVWLL LFSMLVIFLV LAALYESWSI PLAVILVVPL GIIGAIASVM LSGAANDVFF KVGLVTIIGL SAKNAILIVE FAKQALAEGS SLVDSVLLAT KQRLRPILMT SLAFSCGIIP LYLASGPSSE IQNSIGTGVL GGMFTGTVFA VLFVPVFFVF ICQFLERVRR NPFSSKLADK G
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