| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2786 |
|---|
| Symbol | |
|---|
| ID | 5663179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3403713 |
|---|
| End bp | 3404486 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641237428 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001502641 |
|---|
| Protein GI | 157962607 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0573631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAG CAACTGCAAT AATTGTGGGC GCTAGCTCAT TACTTAGCCG TGAAATTGCA
AAACAACTTG CAGATGAAGG CGTTGAACTG GCCCTATTAG CACAAGATCC ACAATCTCTT
ATCGAGTTTA GCCAATCCTT GCCCACTAAG GTGCAGGTGT TTCCGCTGCA AATCGACGAG
CCCGATGCCA TCATCAGTAC CATGAATGCC GTTTGGCTAT CTCTTGGTGG CGCTCATCTG
GTTTTGGTCA ATACAGGTCT CACTCACTAT GACCCTGAAC TACCTTGGCA GCCAGAGCAA
GATATCATCA CAGTTAATGT GCAAGGCTTC TCGGCCATTT GCAATACAGC ATTTAGACTA
TTTCGCGATC AAGGCTATGG TCAATTAGCT GCGATTAACT CGATTGCGGG ATTAAGAGGC
GGCCCTAGTG TGGCTTATCA CGCCTCTAAA GCTTATGCAC AAAACTATTT CGAAGGTTTA
AGCATGCACG CCCAGCGCTT AAAGATGCCT ATTACCATTA CCGATATCCA ATTAGGTATG
CTAGATAAGG CAGCCATGCA GCAAAACAGG CTATGGTTAT CACCACTGCC CGTAGTTGCC
AGCCAAATAA TTAAGGCGAT GAAAACCGGT AAGCGCAAAG CCTATGTAAC CAAACGCTGG
CGTCTCGTCG CTTGGTTAAC CAAAGGCTTA CCAGAGTTTG TTTACAATAC TCGCCACTGG
AAAACCAAAG CGCAGAAGAA AGCTGAACGC GCGGCTAAGA AAGAATCGAA GTAA
|
|---|
| Protein sequence | MTQATAIIVG ASSLLSREIA KQLADEGVEL ALLAQDPQSL IEFSQSLPTK VQVFPLQIDE
PDAIISTMNA VWLSLGGAHL VLVNTGLTHY DPELPWQPEQ DIITVNVQGF SAICNTAFRL
FRDQGYGQLA AINSIAGLRG GPSVAYHASK AYAQNYFEGL SMHAQRLKMP ITITDIQLGM
LDKAAMQQNR LWLSPLPVVA SQIIKAMKTG KRKAYVTKRW RLVAWLTKGL PEFVYNTRHW
KTKAQKKAER AAKKESK
|
|---|
| |