Gene Spea_2778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2778 
Symbol 
ID5663171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp3394375 
End bp3395304 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content49% 
IMG OID641237420 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_001502633 
Protein GI157962599 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01692] 3-hydroxyisobutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.104386 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACTG TTGCATTTAT TGGTTTAGGA AACATGGGTG GCCCGATGGC GGCCAATCTG 
ATTAAAGCGG GCTTTACGGT TAAAGTGTTC GATCTGGTGC CTGAAGCGAT GCAGGCATTA 
GCTGAGCAAG GGGCACTTAC AGCAACAAGC GCTTGCGGCG CCGCAGCGGG CGCGGACATA 
GTGGTGACCA TGCTGCCTGC TGGCAAACAT GTGCGTAGTC TTTATGTATC AAGTGATGCA 
AACGATGATA CAAAAAAAGG GCTTATCGAT GTGGTGGCTG CGGGGACCCT CTTAATCGAT 
TGTTCAACCA TAGATGCAGA CAGTGCGCGC TTTGTTGCCG AGCATGCGGC TAACAAGGGC 
TTGGAGTTTA TCGATGCGCC AGTATCTGGC GGCACGGCAG GTGCGGCGGC TGGTACATTG 
ACCTTTATTT GTGGTGGCAG CGATAAGGCT TTTGAACTGG CACAGGGTGT ATTAAATGCC 
ATGGGGGGGA ATATCTTCCA CGCTGGCGGT CCTGGTGCTG GGCAAGTGGC TAAAATATGT 
AATAATATGC TGCTTTCGGT ACTGATGGTT GCCACATCAG AATCATTGCA GATGGGAGTC 
GATCATGGGC TCGACCCAAA AGTGCTTTCC GATATTATGA AAGTCAGCAG TGGTGGTAAT 
TGGACGTTAG AGAAATATAA TCCTTGTCCA GATGTGATGG ATTCGGTGCC CTCTTCAAAT 
GGATATCAAG GCGGCTTTAT GGTCGACTTG ATGGTGAAGG ACTTAGGGCT TTCGCAAGAG 
GCGGCCTTGT TATCGAATTC GAGTACGCCA ATGGGCGCGT TAGCACGTAG CCTCTATGTG 
AATCATGCGA AACAAGGTAA CGGTAAGCGA GATTTTTCGA GTATTTTTGA GCTGTTTGCT 
CAGTCAGAAC AGATAAAACA CAAAGGGTGA
 
Protein sequence
MSTVAFIGLG NMGGPMAANL IKAGFTVKVF DLVPEAMQAL AEQGALTATS ACGAAAGADI 
VVTMLPAGKH VRSLYVSSDA NDDTKKGLID VVAAGTLLID CSTIDADSAR FVAEHAANKG 
LEFIDAPVSG GTAGAAAGTL TFICGGSDKA FELAQGVLNA MGGNIFHAGG PGAGQVAKIC 
NNMLLSVLMV ATSESLQMGV DHGLDPKVLS DIMKVSSGGN WTLEKYNPCP DVMDSVPSSN 
GYQGGFMVDL MVKDLGLSQE AALLSNSSTP MGALARSLYV NHAKQGNGKR DFSSIFELFA 
QSEQIKHKG