| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2741 |
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| Symbol | |
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| ID | 5663134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3348453 |
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| End bp | 3350438 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237383 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001502596 |
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| Protein GI | 157962562 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGATAA AATCGAGTAT TAATCCACCT GTTTTTTTCT CCTCAGTCAT TTTAATCACC
TTAATGGTTG CAGTTTGCGC CATTTGGCCC ACTCAGTCAC AAGATGTATT CAAAACAGCT
CAATCATGGT TCGAGCTTAA AGCTGGCTGG CTCTACATCT TGGGCGTAGC GGTATTTCTT
ATCTTTATCA TCTTCGTGAT GGTGAGCCGC TTTGGCGATA TCAAGTTAGG CCCTGATCAT
GCTGAGCCTG ATTACACCTA TAAAAGCTGG ATCGCAATGC TGTTTTCAGC CGGTATGGGT
ATCGGCTTGA TGTTCTTCGG TGTGGCAGAG CCTGTGATGC ACTACATGTC TCCGCCAGAT
GCGGATCCAT TGACCATTCA AGCGGCAAAA GATGCCATGA AGATCACCTT TTTCCATTGG
GGTGTTCATG CTTGGGCTAT CTATGCTGTT GTGGCATTAA GTTTGGCGTA CTTCTCCTAC
CGTCATAAAC TGCCTTTACT GCCTAGAAGT GCCTTATACC CGTTAATTGG CGATAAGATC
TACGGCCCAA TTGGTCATGC CGTCGATACT TTTGCGGTAC TCGGTACCAT GTTCGGTGTA
GCGACTTCAC TCGGCTTTGG TGTACTACAG CTTAACTCTG GCCTTAACTA CCTGTTAGGT
GTGCCAGTTA GCACTACGGT ACAAGTTTGC TTAATTATCG GTGTCTGTCT AATTGCGACT
GTGTCAGTGT TCTCAGGCTT AGACAAGGGT GTTAAGCGCT TAAGTGAATT AAACCTTCTG
CTAGCGGTAT TATTGCTATT GTTTGTGCTT GTATTTGGTC CAACGGTTGA ACTACTGCAA
GCATTTGTAC AAAACACCGG TGCGTATTTA AGTGATATCG TCGGTAAGAC GTTTAACTTA
TATGCCTATG AGCAGAAGAA TGACTGGATT GGTGGTTGGA CGCTACTTTA CTGGGGCTGG
TGGATCTCAT GGTCTCCATT TGTCGGTACT TTTATTGCTC GTGTTTCTCG TGGTCGTACC
ATTCGTGAAT TCTTAGTGGG TGTCTTGTTT GTACCGTCTG CGCTGACCTT CCTGTGGATG
ACAGGCTTTG GTAATAGCGC TATTGATGTG ATTTCAAATG GCGGAACCTA TCTGTCTGAC
GCTGTAGCAT CTGATGTCTC GGTTGCTCTG TTCGTGTTTT TTGAGCATTT ACCGTTCTCA
ACCTTGCTGT CGACGATTGC ACTTTGTTTA GTTGTTACTT TCTTCGTGAC ATCATCCGAC
TCAGGCTCTT TGGTTATTGA TAACCTGACA TCGGGCGGCG ATCATAACGC ACCAGTATGG
CAGCGTATTT TCTGGGCCTT AATGCAAGGT GTTGTGGCAT CGGTTCTATT GCTAGCCGGT
GGTTTACAAG CCCTGCAAAC CGCGGCGATT GCCAGTGCGC TACCTTTCTT AATCGTTATG
CTATTGATGT GTTTTGGCCT ATACAAAGCG CTTAAAGACG ATTGGTTGAA GATCAACAGT
GTTCAGTCTC ACAATACTAG CGTGCAGTTC ACTAAGACCA ACGTAAGTTG GGAATCGCAT
ATTGACGTAT TGCTGTCTCA CCCAAGCCAG CAAGAAGCCC AAGATTTCTT AGATAAGGTG
GCGCAGCCAG CATTATCAAA AGTATGTGAA AGCTTCCTAA GTCGCTCGAT TTCGGCGGAG
ATCTTAAACT TCGACAATCG TGTGCGTTTT GTGGTCCATA GTGAAGAGCA TAATGACTTC
GTGTATGGCC TACGTATTCG TGCCTATACC ATCTCTAATC CGTTAGACAG TGACGTTAGC
AATGATGATG GTGATAACTT CTACTACCGC GTAGAAGTCT TCCTTGAGCA CGGCGGTCAA
CACTATGACG TGATGGGCTT TACTCAAGAA CAGATCCTGG CAGATGTAGT GACTCAGTAT
GAGAAATACT TACATTACCT GCATTTATCA AGTTCAGAGT ATTTAAGCAG TGAAACTAAC
GCTTAG
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| Protein sequence | MSIKSSINPP VFFSSVILIT LMVAVCAIWP TQSQDVFKTA QSWFELKAGW LYILGVAVFL
IFIIFVMVSR FGDIKLGPDH AEPDYTYKSW IAMLFSAGMG IGLMFFGVAE PVMHYMSPPD
ADPLTIQAAK DAMKITFFHW GVHAWAIYAV VALSLAYFSY RHKLPLLPRS ALYPLIGDKI
YGPIGHAVDT FAVLGTMFGV ATSLGFGVLQ LNSGLNYLLG VPVSTTVQVC LIIGVCLIAT
VSVFSGLDKG VKRLSELNLL LAVLLLLFVL VFGPTVELLQ AFVQNTGAYL SDIVGKTFNL
YAYEQKNDWI GGWTLLYWGW WISWSPFVGT FIARVSRGRT IREFLVGVLF VPSALTFLWM
TGFGNSAIDV ISNGGTYLSD AVASDVSVAL FVFFEHLPFS TLLSTIALCL VVTFFVTSSD
SGSLVIDNLT SGGDHNAPVW QRIFWALMQG VVASVLLLAG GLQALQTAAI ASALPFLIVM
LLMCFGLYKA LKDDWLKINS VQSHNTSVQF TKTNVSWESH IDVLLSHPSQ QEAQDFLDKV
AQPALSKVCE SFLSRSISAE ILNFDNRVRF VVHSEEHNDF VYGLRIRAYT ISNPLDSDVS
NDDGDNFYYR VEVFLEHGGQ HYDVMGFTQE QILADVVTQY EKYLHYLHLS SSEYLSSETN
A
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