Gene Spea_2606 details

Gene Information

• Locus tag: Spea_2606
• ID: 5662999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 3174628
• End bp: 3175191
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 641237244
• Product: RNA polymerase sigma factor
• Protein accession: YP_001502461
• Protein GI: 157962427
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.167872
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGATA GTTGGCGCAA TAAAAAGTCG AAGTCCACGG TCTCTTCAGA CATGGTTAGC 
AAACAACGAC GATACGATAG CCTTGTCAGG GCACTTCACG CTGATATTTA CCGTTTCGCC 
TATTGGCTTT GCGGAGATAA ACACGTCGCT GAAGACATCA CTCAAGAAAC GTTTTTACGT 
GCTTGGCGCT CGCTCGACTC ATTGAAAGAC GAGAAAGCTG CAAAAGCTTG GTTAATCACA 
ATTTTACGCC GCGAAAATGC AAGACGCTTT GAGCGTAAAC AGTTTAATTA CTCAGATGTT 
GAGCAAGAGT TCATTGAAGA TACACTTTCT GGCACAACCG AAGAGCTTGC TGAGCAATAC 
TTAATACGCA GACAGATTTA CAACTTAGAA CTGGAGTACC GAGAACCCCT GTTATTGCAA 
GTCATTGGCG GATTTAGTGG TGATGAAATA GCAAAAATTC TCGATTTAAA TCGCAATACC 
GTTATGACAC GTTTATTTAG AGCAAGAAAC CAACTTAAAG ATCAACTCGA GCAACCACAG 
TTCAGGGGGC AGTCCAATGG ATGA 

 

Protein sequence

MFDSWRNKKS KSTVSSDMVS KQRRYDSLVR ALHADIYRFA YWLCGDKHVA EDITQETFLR 
AWRSLDSLKD EKAAKAWLIT ILRRENARRF ERKQFNYSDV EQEFIEDTLS GTTEELAEQY 
LIRRQIYNLE LEYREPLLLQ VIGGFSGDEI AKILDLNRNT VMTRLFRARN QLKDQLEQPQ 
FRGQSNG