| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2420 |
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| Symbol | |
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| ID | 5662813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2954883 |
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| End bp | 2958599 |
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| Gene Length | 3717 bp |
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| Protein Length | 1238 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641237046 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001502275 |
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| Protein GI | 157962241 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.415139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACG AAAACCGTGA GAACCAAACA GTAAATATGA CAACTTCAGC CAGTAGCCAG
TTAAGTGCCA ATATCGTCAC CGAAGCGTTA GATACCCTAA CCCTTCCCTT TGGCGGTAGC
CGTTTAATCG AGGCCAGCGC CGGTACAGGT AAAACCTTTA CCATTGCCGG ACTCTATGTG
CGCTTACTAC TCGGTCATGG TATTGAAGCG CCGCTCACCT GCGAGCAAAT TTTGGTGGTG
ACCTTTACCA ACGCCGCAAC GGGTGAACTT AGAGACCGTA TTCGTAAGAA AATTCAGCTG
GCGTATCGCT GTTTTATCGG CCTTGAAGTG GACGATGAAC TGATTAACTC TCTCTATCAA
GCCACGCCTG AAGCAAGCCT GCCTATCGCC CGTAAACGTC TAGACTTGGC GTTAAAATCC
CTCGATGAGG CGGCTATTTT CACTATTCAC GGTTTTTGTC AGCGCATACT GGCGGATATG
GCGTTCGAGT CATCCTTGCT ATTTGAGTCA GAGTTTACCC TAGATGATAG CGAGTTCCTG
CACCATGCGG TACGGGATTT CTGGCGCGAG AGATGCTACC CGTTAACAGG CTGCTTAGCC
GATGCGATTA TCAGTAAATT TAGCGATCCC GATACCCTTT CTCGTCAGCT CAGGCCGCTT
CTTGGTGCCA GCAGCGCTGT CGCCAGTCCA AAACCTCAAG CCTTTGAAAA ACTTGAGGCT
GAACTAAGCC AGAGTCTAAG CCGCTTTAAA CTTATCTGGC CTAGAGAGCG CGAACAAACC
GAAACCTTGT TACACGCCTT GCCGCTCAAC GGCGCACGTT TTGGCAAGAA AGCTGACGGC
TACCCGAAAC TGGCTAAGAT GCTCGATGAT CTCGATAACT GGGTCGCCTT CGGTCAGGCT
CTGCCACCAG CAAAAGTACT TGAAGCCCTA TCGCTTAACG AGCTTAAGTT AAATAAAGGC
GGTGAAGTGC CCACGGCGCA GCAAGCGCCT ATGCTGGATC ATATCGAAAG ACTGGCACAA
CTTATCGCAA ACCTTATTCC GAGCTTTCTG TATTGTGCAA GAGATGGCAT CGCCTCACGT
TTTGCCAAGC AAAAGCTTGA GCGTAACCTG CTGACCCCAG ATGATCTGCT GCTAACACTG
GCTAAAGCAC TTAACGTCAG CCAAGATAAT CGCTTAGCCA GCAGTATCGC CCAACGCTTT
CCGGTGGCGT TAATTGACGA GTTCCAAGAT ACTGACCCAT TGCAGTTTGA GATCTTTAAC
GCTATCTATC AAAGCAGTGG CTCTAAAAGT ACAGCAGCTA ATGGTGATAA AACGCCAAAC
GACAAACTCA GCCTGCTAAT GATTGGCGAT CCCAAACAGG CGATCTACGC CTTTCGCGGC
GCCGACATTC ATACTTATAT TCAGGCTCGC GCCCAAACGG CTAAACACTA TAACCTAGAT
ACCAACTATC GCTCTAACAG GCAGATGGTG GATGCGGTCA ACGGGATCTT CAACCACAGA
GACGATCCCT TTATCAGCCA ATCTATCCCC TTCGAGCCAG TAAAAGCATC AAGCTTTGCT
GACAAGAAAG TGCTTAATGA AAGAGCAGCA GACAGCAGCG CTCTCAGGTT AAGGCTATTA
AGTGAAGAAG CTGAAAAAGG GCTCAATAAG ACCACGGCCA GACAGTTAAT CGCCGATGAT
GTGGCCGATG AAATTGCGAG GCTGTTAATT GATGCACAGC AAAATCTTTG TGCGATTGGC
ACCAAGCCAC TTAGAGCCAA AGATATTGCA ATCTTGGTCA GAGACAGACA CGAAGCCAAT
GTGGTCCGAG CTGCATTAAG TGAGCGTCAA ATTGGCTCGG TATTCTTAAG CCGAGATAGC
GTATTTAACA CTTTAGAAGC CAGAGAGCTT GCGCTAGTGC TGTATGCGAT GGCCGATCCT
AAAGATGAGC GCGCATTAAG AAGTGCTCTA GCCACCTCAT TGCTCGGTTA TAGCGCCGAG
GCGATCCATA GCTTTAACCA AGATGAAGAT AAGCGTCAGA CACTGCTCGA ACAATTTGCG
CAGCTACATC AAGTTTGGTT AAAGCGCGGG ATAATGCCTG CGCTACTGAC ACTTGCTAGC
CAAACACAGA TCATCGAGCG TTTGCTTAGT GGTGAAGAGG GAGATAGACG CTTAACTGAC
TTTAGACACC TAGGTGAGCT ATTGCAGCAA AAAGCCACCG AGCTCGATGG TAGCAGCGCG
CTTATCAACT GGTATGAGCA AGCGCTTATT GAAAACCTGC CAAATGAAGA GGCGCAGCTG
CGTTTAGAGA GCGAGCAAAA CCTTGTCCAA GTAGTCACGA TTCATAAGAG TAAGGGACTC
GAATACCCTA TCTGTTTTGT GCCCTTTGTC AGCCTGAGCC GCGATAACCG TAAAAGACCT
GCCCCCATGC TTTACCATGA TGACAATCAG CTTATCTGGG ATATTGAACA GACAGATGAA
GGCTGGGATC GACAAAAGCG TGAAACCTTG GCCGAAGATC TGCGCCTACT CTATGTTGCG
CTGACAAGAC CCGTGCTTAA GTGTTATCTG TATATCGCCA ATCATAGCCG ATTTACTAAA
AAGTCGGGTA TGAGCAGTCA ATTACATGAA ACCGCCATAG GTTATCTGTT GGGCGTTGAA
GATAAGGCCT GCGATTATGA CCGACTACTC GCCCAAGCCC AATTACTGCA ACAAAAGGAT
CCTCAGGCCA TCAGCCTGTC AGAGCTACCT GCGGCGGGTT CAGATGAATA CAGTGACACA
ACACTAGTCG TGCTAGAAAA AGAGGACACC ACTGAACAGC AGCTTGCGCC TAAAATACTA
AACAGGCCTA TGTTAACGCC GTGGCGTGTA GGCAGTTACT CAGGCCTCGT AAAACATTTA
GCCCATGAAA AAGTGCTACC GGGTATGGAT GATGAGCAGT TCCCTGAGCT CGATGTGATC
CAAGATGAAG TGGATAGCTC GCCATCACGC TTTACCTTTG AGCGCGGCGC TAACGCCGGT
AGCTTTATGC ACTTAGTGCT GGAGCTGATT GATTTTACCC AAGCCGAAAC AGATCTTGAG
CAGCAACTGC CTATCGCCAT GGCAAAATAC GGTATAGACG AGAGCTGGAC TGAGGTACTT
AAAGATTGGT ATCTGGATCT GCTTTATGCG CCGTTAGCCA GTGATAACTC CTTAATGCTG
GCCCAGCTGA CTGCGGGGCA AAAGTTGGTT GAGATGGAGT TTTACTTGCC AATCAACGCC
CTTAGTTGCG ACAAACTCAA TAGCCTCTTA ACTGAATTTG GTTACAGTGC AGGCCTTAGT
TTTGACGAAT TGCAGGGTAT GTTAAAAGGT TTTGTGGATT TAACCTTTGA ACATAATAAT
CAGTTTTTTA TTGCCGATTA TAAGTCGAAT CACTTGGGCG ATGACTTGAG TCAATATCAT
TATGCCAATA TGCAACACGC CATTCGCAGC CACAGGTACG ATCTGCAATA CATCATCTAT
ACCCTTGCTC TGCACCGATA TCTGGCGCTT AGAATGGCGA ACTATGATTA CGATCTGCAT
ATCGGTGGCA GCTTTTACCT CTTCTTACGG GGCATGTCGA CAAGCAGTCC ACAATCCGGC
GTCTTTTATG ATAAGCCGCC TAAGTTACTA ATTGAGAAGC TCGATGCCTT ATTCGGGAAC
CAGATGACAG CACAAAGTAT TGAACAGTCA AATAACGCTC AAGTGGAGGT CAAATGA
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| Protein sequence | MSDENRENQT VNMTTSASSQ LSANIVTEAL DTLTLPFGGS RLIEASAGTG KTFTIAGLYV
RLLLGHGIEA PLTCEQILVV TFTNAATGEL RDRIRKKIQL AYRCFIGLEV DDELINSLYQ
ATPEASLPIA RKRLDLALKS LDEAAIFTIH GFCQRILADM AFESSLLFES EFTLDDSEFL
HHAVRDFWRE RCYPLTGCLA DAIISKFSDP DTLSRQLRPL LGASSAVASP KPQAFEKLEA
ELSQSLSRFK LIWPREREQT ETLLHALPLN GARFGKKADG YPKLAKMLDD LDNWVAFGQA
LPPAKVLEAL SLNELKLNKG GEVPTAQQAP MLDHIERLAQ LIANLIPSFL YCARDGIASR
FAKQKLERNL LTPDDLLLTL AKALNVSQDN RLASSIAQRF PVALIDEFQD TDPLQFEIFN
AIYQSSGSKS TAANGDKTPN DKLSLLMIGD PKQAIYAFRG ADIHTYIQAR AQTAKHYNLD
TNYRSNRQMV DAVNGIFNHR DDPFISQSIP FEPVKASSFA DKKVLNERAA DSSALRLRLL
SEEAEKGLNK TTARQLIADD VADEIARLLI DAQQNLCAIG TKPLRAKDIA ILVRDRHEAN
VVRAALSERQ IGSVFLSRDS VFNTLEAREL ALVLYAMADP KDERALRSAL ATSLLGYSAE
AIHSFNQDED KRQTLLEQFA QLHQVWLKRG IMPALLTLAS QTQIIERLLS GEEGDRRLTD
FRHLGELLQQ KATELDGSSA LINWYEQALI ENLPNEEAQL RLESEQNLVQ VVTIHKSKGL
EYPICFVPFV SLSRDNRKRP APMLYHDDNQ LIWDIEQTDE GWDRQKRETL AEDLRLLYVA
LTRPVLKCYL YIANHSRFTK KSGMSSQLHE TAIGYLLGVE DKACDYDRLL AQAQLLQQKD
PQAISLSELP AAGSDEYSDT TLVVLEKEDT TEQQLAPKIL NRPMLTPWRV GSYSGLVKHL
AHEKVLPGMD DEQFPELDVI QDEVDSSPSR FTFERGANAG SFMHLVLELI DFTQAETDLE
QQLPIAMAKY GIDESWTEVL KDWYLDLLYA PLASDNSLML AQLTAGQKLV EMEFYLPINA
LSCDKLNSLL TEFGYSAGLS FDELQGMLKG FVDLTFEHNN QFFIADYKSN HLGDDLSQYH
YANMQHAIRS HRYDLQYIIY TLALHRYLAL RMANYDYDLH IGGSFYLFLR GMSTSSPQSG
VFYDKPPKLL IEKLDALFGN QMTAQSIEQS NNAQVEVK
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