Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2356 |
Symbol | rnfD |
ID | 5662749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2872854 |
End bp | 2873906 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641236978 |
Product | electron transport complex protein RnfD |
Protein accession | YP_001502211 |
Protein GI | 157962177 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTTTA AGTTAGCCTC ATCACCTCAT TTAAAGGTGC AACTACAAAC CCAAAGTGTG ATGCGCCGGG TTATTCTATG TGCCCTGCCG GGTATTGCAG CTCAGTGTTA TTTTTTCGGC TTTGGCGTAC TCATACAAGT TATGTTGGCT ATTGTTGTTG CATTAACCGC AGAAGCAGCA GTACTTGCGT TAAGAAAACG CGCGGTACTT TCTACTATTA GCGATAACAG CGCCTTATTA ACGGCAATCT TAATTGGTGT CGCCATACCG CCTATCGCTC CATGGTGGTT AGTGGTGATT GGTACCTTGT TTGCGATTGT ACTCGTTAAG CAGCTTTACG GTGGTCTAGG GCAAAATATC TTCAACCCGG CAATGGCCGC TTACGTCATG CTGCTTATCT CGTTCCCGGT GCAGATGACA AGCTGGTCAA TTCCAACGGC GATTGCTCAA AACCCGATGG ATATTGGCTT AACGCTACAG GCAATATTTG GCTCGATGAG CGCCGAGCAA TTAAGTCTTT ATAAACTCGG TTTTGACGGC GTAGCTATGG CAACCCCGCT CGATACTGTT AAGACCGACC TATCTTTAGG CCTAACGACC TCAGAAAGCT TAACTAAAGC CATTTTCAGC GATGGCTATG GCGTAGGTTG GTTCTGGGTC AACATGGCTT ACCTAGCGGG CGGCCTTATT ATGCTGAAGC TAAAAGTGAT CCGCTGGCAC ATCAGTTTCG CCATTCTAGG TTCACTCTTC GTCTGTAGCA GTTTTGGTTA CCTGTTAAGC CCTGATACTC ATGTAGGTCC ACTACTGCAG CTATTTTCAG GTGCCACCAT GATTGCGGCA TTTTTTATCG CAACTGACCC TGTAACGGCC GCAACCAGTG TTAAAGGACG CCTGTTGTTT GGCACACTAA TAGGTGTGAT GGTCTATGTT ATTCGTACCT ATGGTGGCTA CCCAGACGCT TTCGCTTTTG CCGTTTTACT GGCCAATCTA TGTGCGCCAT TTATTGATTA TTACGTCAAG CCGCGTACTT ATGGACACCG CACGGGCAAC TGA
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Protein sequence | MAFKLASSPH LKVQLQTQSV MRRVILCALP GIAAQCYFFG FGVLIQVMLA IVVALTAEAA VLALRKRAVL STISDNSALL TAILIGVAIP PIAPWWLVVI GTLFAIVLVK QLYGGLGQNI FNPAMAAYVM LLISFPVQMT SWSIPTAIAQ NPMDIGLTLQ AIFGSMSAEQ LSLYKLGFDG VAMATPLDTV KTDLSLGLTT SESLTKAIFS DGYGVGWFWV NMAYLAGGLI MLKLKVIRWH ISFAILGSLF VCSSFGYLLS PDTHVGPLLQ LFSGATMIAA FFIATDPVTA ATSVKGRLLF GTLIGVMVYV IRTYGGYPDA FAFAVLLANL CAPFIDYYVK PRTYGHRTGN
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