Gene Spea_2352 details

Gene Information

• Locus tag: Spea_2352
• ID: 5664775
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2867204
• End bp: 2869120
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 641236974
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_001502207
• Protein GI: 157962173
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000161586
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAACCT CTAAACTTTT CCAGTTGTTT TTAGTTTTAC TTTTTTCAGG ACTCACCTTT 
TTAAGTTACC AAGATGAAAA GCTAAAATTA TCGACTCAAG CTCAACTGCA ACTTGATCAA 
TACGCCAATA CCATCAAGCA ACAGCAGCAA TGGCAAGGAA AAGGTGAAGC GCTTTTTGAC 
ACCCTCACAC AACAATTTAA CTTTCAATTT TTCCAATATA TCGATACGTC GGATAGCGGT 
AATAATTTCA CTCATGGCCA ATTAGCTCCA ACAGAGAAAG TAAATTTAGC TAAATTTTTT 
TCCCTTCAAT CACCACACAC TCAGGCTTTA GATGCTGGGA GATTACAAGT TAAACTATCT 
AACCTAGCGA CAATTGATAG CACTGTGGCC CGGTTTCAAA ATGTCCTGTT TATCATTTGG 
ACGACATTCC TACTGATTAG TGTCACTTAC CTACTATTAA CCATGAGACA AAAAAGAAGT 
ATTCGCTATA TTTCAATGTG TGTTGAAAAT TTAGCTAAGC TCTCTTTCGG TGCAATTGAA 
AATTCACGTA TAAAAGGCGA ATTTAAAAGC ATAGGAGTCA CGTTCGATAA CAGTAAACAG 
CTTTTAAAAG CCAAAATCGA TGGATTCCAT AAAACCCATG AACGACTAAG CAAAACCGCT 
TTTCATGATC CGATCACAGG TTTTGGTACT CGAGCTCTAT TTACCGAAAA ACTTGATGAA 
ATAGGAAAAC CCGAACACAA AGGCAAAGGT GTTTTGATGG TTATTAGGGC GACGGAACTC 
GCCTCTATCA ATCAGATGCA TGGTAGAGAA GCGGGGGATG ATTATCTTAC TCGCATTGCT 
AATGAGATTA AGTGTGCATT TAATGAAATT CCTCAAGCAC AGTTTTATCG GATCTCAACT 
GCCGACTTTG CCATTGTTAT TGCCGATATA GCTATCAAGC AAGCCACCGG AATAGCCGAT 
GCTCTTAAGA CAGCATTTAA TGAATATCAA CAGCAAGTTG GCACTCCAGC TATTGGTCAT 
ACCGGCTTAG TGCCCTACCT TCAAGATAGC GACCCAGTCT CTTTAATGAC ACTGGCTGAT 
ACCGCCGTCA GTATTGCTCA AACATTAGGC CCTAACAGCT ACCATATCCA GGAAAAGCTA 
ACAGGCGGTG AGCTTTTTGG TGAGAGTCGC TGGAAAGTGG CGATCAACGA CCTTTTAAGA 
CGAAAAGCGA TAAGGTTCTA CATTCAACCT ATTCGTCCAT GTCGACATAA TGTCGAATTC 
TATCGAGAGC TACTATCACG CTTTTATAAT AGCCAAGGAA AACTATTACC CACAGCAACA 
GTCATCGCGA TGGCAGAACG TCACGGCATG AGCGAAGAAC TCGATAAGCT AATCGTTTTG 
AATACACTTC GCATGCTTAT CCAGTCACCG AATCTAGACG GGCTTATAGG TATCAACATC 
AGTGCTGCCT CTGCTACCAA TAAATCGTTT GTTTCTTGGT TAAAAAACAT ACTCAGCAGG 
CAGAGACAAA TCGCAGCTAG ATTAGTATTT GAGGTGAGTG AGTCTGGTAT GCAGGCAAAT 
CTTAGTGCCA CCTACCATTT TATTAATGAA CTCCATAGTG TCGGTTCACG GATCTCTATC 
GAACGATTTG GTTTAGGCTT TACTTCATTT AAACTTTTTA AAGAAGTTCG CCCTGACTAT 
ATCAAGTTAG ATCCTAGTTA CACTCAAGAA ATAACCCAAG ATCCACACAA TAAATTTTTC 
GTTAAAATGA TCATAGATAT CGCCCGAAAA CTCGGGATAA AAGTAATTGC AACTGGAGTA 
GAAAAGCAGC AAGACAAGTT GGCAATGGAG CAACTGCTCA TTGATGGCTT ACAAGGCTAC 
TATATTTCGG AACCTAGCCC GTTAAAAAAG GAAGAAAAGT CGCTTACTAC TGCTTAA 

 

Protein sequence

MTTSKLFQLF LVLLFSGLTF LSYQDEKLKL STQAQLQLDQ YANTIKQQQQ WQGKGEALFD 
TLTQQFNFQF FQYIDTSDSG NNFTHGQLAP TEKVNLAKFF SLQSPHTQAL DAGRLQVKLS 
NLATIDSTVA RFQNVLFIIW TTFLLISVTY LLLTMRQKRS IRYISMCVEN LAKLSFGAIE 
NSRIKGEFKS IGVTFDNSKQ LLKAKIDGFH KTHERLSKTA FHDPITGFGT RALFTEKLDE 
IGKPEHKGKG VLMVIRATEL ASINQMHGRE AGDDYLTRIA NEIKCAFNEI PQAQFYRIST 
ADFAIVIADI AIKQATGIAD ALKTAFNEYQ QQVGTPAIGH TGLVPYLQDS DPVSLMTLAD 
TAVSIAQTLG PNSYHIQEKL TGGELFGESR WKVAINDLLR RKAIRFYIQP IRPCRHNVEF 
YRELLSRFYN SQGKLLPTAT VIAMAERHGM SEELDKLIVL NTLRMLIQSP NLDGLIGINI 
SAASATNKSF VSWLKNILSR QRQIAARLVF EVSESGMQAN LSATYHFINE LHSVGSRISI 
ERFGLGFTSF KLFKEVRPDY IKLDPSYTQE ITQDPHNKFF VKMIIDIARK LGIKVIATGV 
EKQQDKLAME QLLIDGLQGY YISEPSPLKK EEKSLTTA