| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2217 |
|---|
| Symbol | |
|---|
| ID | 5662610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2689214 |
|---|
| End bp | 2690170 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641236820 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit III |
|---|
| Protein accession | YP_001502072 |
|---|
| Protein GI | 157962038 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | [TIGR00782] cytochrome c oxidase, cbb3-type, subunit III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.04222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACT TCTGGAGTAT ATGGATTATC GTACTCACGG TTGTGGTAAT CATTGGTTGT
GTTGTTCTAC TACGTGCTTG TTCTAAGAAC GACACGGGTG TAGAAGAAGG CAAGTCAATG
GGTCACAGCT TCGATGGTAT TGAAGAACTT AACAACCCAC TACCTAAGTG GTGGAGTTAC
ATGTTCTACC TTACTATCGT ATTTAGTGTC ATCTATCTTG CACTTTACCC TGGTCTTGGT
AGCTTCAAAG GTCTTTTAGG CTGGACAAGC TCTAACCAAA GCGTACGTAC CCTTGAAGAG
TCTAAAGTTG CAGTTGAAAC AGCTGTAAAA GAAGGCCGTT GGGTTCAGTA TGACCAAGAA
GTAAAACACG CAGACGAGAA GTTTGGCCCT ATCTTTAAGG CATACGCTGA TACACCATTG
GAAGAGTTAG TTAAGAATGA AGAAGCCCTT AAAGTGGGTG GACGTCTATT CCTACAAAAC
TGTGCCATGT GTCATGGTAG TGACGCCCGC GGTAGTAAAG GCTTCCCTAA CCTAACCGAC
AATGCTTGGT TATATGGTGG TGAGCTAGCA ACGATTAAGA CCTCTATCAT GAACGGTCGT
CACGGTATGA TGCCGCCTAA AGGTGGTTTA CCGATTGAAG ACAGTGAGAT TAAAGGTCTA
GCTGAATACG TTGTGAGTCT ATCGGGTCGC GAGCACGATG CTGCGCTTGC CGCTCAGGGA
CAAGGTTCAT TCATGAAAGG CTGCTTCGCC TGTCATGGTA TGGACGGTAC TGGTAACAAG
TTTATGGGTG CCCCTAACCT AACTGACAAC GCTTGGGTCT ACGGCGGAAG CCGCGGCGCT
ATCGAGCAGT CAATTAAGAA CGGTCGTACA GGTGTTATGC CTGCATGGAA AGATGTATTA
GGTGAAGAAA AAGTTCACGT AATCACAGCT TACGTTTACA GCTTGTCTAA CAAGTAA
|
|---|
| Protein sequence | MSNFWSIWII VLTVVVIIGC VVLLRACSKN DTGVEEGKSM GHSFDGIEEL NNPLPKWWSY
MFYLTIVFSV IYLALYPGLG SFKGLLGWTS SNQSVRTLEE SKVAVETAVK EGRWVQYDQE
VKHADEKFGP IFKAYADTPL EELVKNEEAL KVGGRLFLQN CAMCHGSDAR GSKGFPNLTD
NAWLYGGELA TIKTSIMNGR HGMMPPKGGL PIEDSEIKGL AEYVVSLSGR EHDAALAAQG
QGSFMKGCFA CHGMDGTGNK FMGAPNLTDN AWVYGGSRGA IEQSIKNGRT GVMPAWKDVL
GEEKVHVITA YVYSLSNK
|
|---|
| |