Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2094 |
Symbol | |
ID | 5662487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 2535348 |
End bp | 2536550 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641236689 |
Product | integrase family protein |
Protein accession | YP_001501949 |
Protein GI | 157961915 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000349759 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGATT TAACGTCACT TTTACAGATT AAGGCCAAAG ATCTAAAGAT GAATTCTGAG CAAAACTTTC CTGAAATAGA GGGCTTTTCA CAAATCGAAG ACTCAGATCT GATAGAGAAT GCTCCTCAAG AGGTCGCTAT TGTTGATGGC GAGAGTGCTC TGACTCGATT TAATTCTGGC TTAGCAGAGA GTCGAACTTC TCAGTTTGAT CACAATGAGA AGTTCTTCAA AGAGCAGCAA CTTCCTATCT CAATCTTAGA TGATTACAAA AGTGCGGCTG GTGAAACCCA ATATGAGATC TCTGCTAACA CTCGCCGAGT CTATCGTTCC AGTTTTACCA TTTTCAAGAA TTACTGCGAT CAACATAATC TAAGTCCCCT GCCCGCAGAC CCTCGCAGTG TGATTTCTTT TATCGGTCAT CAAAAAGAGC TCTACCAGGA AAAGAATGGC CACCAGCTAT CAAAACAAAC AATCAACACC CGTTTGGCGG CAATCCGTTT CTTTCATATT CAAGCCGCAT TGCACTCACC GACTGAACAT CCACTGGTGA TCCGAGTGAT GCGCGGCCTG ATGCGTAACC AATATCGACA TGTTTCTGAC TATGATCAGC AACCGATCAC CTATGACGAA CTGGAGATGT TATTGGCCGT AATTGATCAA CAACCAAAAG AGCTAACTCG TTTACGAGAT AAGGCTATTT TACAGCTTGG CCTGCAAGGT GGATTTAGAC GTTCAGAATT AGCAGAAGTC AGAATTGAGC ATATTAGTTT TTTAAGAGAG AAGTTAAAGG TTCGGGTACC CTATTCAAAG AGTAACCAGC AGGGACAAAG GGAGTGGAAA GATCTCCCTA AACAAGAACT ATTTTCTGCT TATGATGCCG TTCAACAATG GCTCGACGCC ACCAAGATTA AACAGGGACA CCTGTTTAGA TCACTTAGCC GTGATGGCAA CTCAGTTAGA GAGTATCAGA TCACTCAAGA AAAAATAGGT AAGGGTTTTT TAAAGGGGGA TGACATTTAT CAGATGATAA AAAAATACTG TGATAAGGCG GGACTCAATT CTCGATTCTA TGGAGCCCAT AGTTTACGAA GCGGTTGTGT TACCCAGCTC CATGAAAATG ATAAAGACCA TCTCTACATC ATGGCAAGAA CTGGGCATAC AGATCCAAGA TCATTGCGAC ACTACTTAAA ACCTAAAGAT TAA
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Protein sequence | MLDLTSLLQI KAKDLKMNSE QNFPEIEGFS QIEDSDLIEN APQEVAIVDG ESALTRFNSG LAESRTSQFD HNEKFFKEQQ LPISILDDYK SAAGETQYEI SANTRRVYRS SFTIFKNYCD QHNLSPLPAD PRSVISFIGH QKELYQEKNG HQLSKQTINT RLAAIRFFHI QAALHSPTEH PLVIRVMRGL MRNQYRHVSD YDQQPITYDE LEMLLAVIDQ QPKELTRLRD KAILQLGLQG GFRRSELAEV RIEHISFLRE KLKVRVPYSK SNQQGQREWK DLPKQELFSA YDAVQQWLDA TKIKQGHLFR SLSRDGNSVR EYQITQEKIG KGFLKGDDIY QMIKKYCDKA GLNSRFYGAH SLRSGCVTQL HENDKDHLYI MARTGHTDPR SLRHYLKPKD
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