| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2021 |
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| Symbol | |
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| ID | 5662414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2446824 |
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| End bp | 2447786 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641236616 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001501876 |
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| Protein GI | 157961842 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.477325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACTTCC TAATTGGTTT ATTTGGTCAG TTTTTTGATG ATCCTCAGCA TGTAGAATGG
GCAATTTACT CGATTTCCGC GATTGCAGGA GTCACCTTAG CAATATCGAT TTCCTATCTG
ATAAGCGGTG TCTACTCCCC TATCAGATCA AGGTTAAAAT CACTTAATGG AGAGAAAGTG
ACTAAAAATA GTCAGGATGT CACTGGTACG CTCGAACATG GCATAGGCGA GATGGCTAAA
AAGCCATTTC TCAACTTTTC TAACCATGAA ACCAGAAGGT TACTTATACA TGCTGGATTT
CATTCTGAAA ATGCTTTAGC CGTTTTTAAT GCTTCTCGCT TATTGCTTAT TCTGTTTGGT
TTTATCACCT CTTTACTTAT TTTAAACCTG TTCCCTAATA TATCGGGATT TTGGACTTTT
TATATCTTTT GCCTTTTTAT TGGCGGAGCA TTTATTGCGC CCTCAATGGT TTTGCAATCA
CTTTCAAAAC GACGTATGCG AAAGCTTAGG GTCGGTTTTC CCGATGCATT AGATCTGTTA
GTTGTTTGCT GTGAAGCTGG TTTAGGGCTG ATGGCCGCTA TGCAACGGGT TGCTAGGGAG
TTGGCATTTA GTCACCCGAG CCTAGCCAGT GAGTTGGAAT TGGTCTGTAG TAAGGTTAGA
GCAGGACTTA CCATTAAAGT TGCCCTACAA GAGTTTACCG AAAGAACTGG TTTAGAAGAT
ATTAAGGGGC TTAATTCGGC AATTTCACAG AGTATGCGCT TGGGTACTGG CATAGCAGAA
ACATTGCGTG TTTTTTCTGA TGAATACCGA AACAAAAGAC TGCAAGCTGC AGAAGAGCAA
GCGGCTAAAC TTGCTGTCAA GATGATATTT CCGATGATGT GTTGTATTTG GCCGTCATTT
TTTATCGTTG CTGTAGGACC TGCGGTATTA AAAGTGATGA AAGTATGGGG TCAGGCTTTT
TAG
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| Protein sequence | MDFLIGLFGQ FFDDPQHVEW AIYSISAIAG VTLAISISYL ISGVYSPIRS RLKSLNGEKV
TKNSQDVTGT LEHGIGEMAK KPFLNFSNHE TRRLLIHAGF HSENALAVFN ASRLLLILFG
FITSLLILNL FPNISGFWTF YIFCLFIGGA FIAPSMVLQS LSKRRMRKLR VGFPDALDLL
VVCCEAGLGL MAAMQRVARE LAFSHPSLAS ELELVCSKVR AGLTIKVALQ EFTERTGLED
IKGLNSAISQ SMRLGTGIAE TLRVFSDEYR NKRLQAAEEQ AAKLAVKMIF PMMCCIWPSF
FIVAVGPAVL KVMKVWGQAF
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