| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1916 |
|---|
| Symbol | |
|---|
| ID | 5662310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2327079 |
|---|
| End bp | 2327831 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641236505 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001501773 |
|---|
| Protein GI | 157961739 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.591058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTAG CCCCTGTAAG AGCGATGATA CTAGATATCC GTCGGTTTAT GCCTCGGATT
GGTGGCAAGA AACTCTACTT TTTACTTAAA CCTAAGTTCA TCGAGAAAGG GATTAAACTT
GGGCGCGATA ACTTCTTTAG TTACTTGAAA AGTGAAGGCT TGTTAGTCAA ACCTAAGCGT
AATTATACCA AGACGACTAA CAGTAAACAT TGGATGAAGA AACATCCAAA TTTACTGAAA
GAGTTAGTGC CAACAGCACC TGAAGAGGTG TTTGTTAGTG ATATAACATA TGTGCAATCA
GAGCAAGGCA TACATTATCT ATCATTGGTA ACTGACGCGT TCAGTCGTAA AATAATGGGA
TATGAATTAA GTAATGAAAT GAAAGCTACA GACGTAGTCA AAGCGTTAGA AATGACGATA
AGTAATCGGC AGTATCAACA TCGAGCAGTG CATCACTCAG ACAGAGGGTT ACAGTATTGC
TCTGCCGTTT ATCAGTTAGC GTTGCAAAGA AGTGACATCC GCGCATCAAT GACCGATGGA
TATGACTGCT ACCAAAACGC ACTAGCAGAA CGTATAAATG GGATATTAAA GCAAGAGTTT
CTATTATCTC CTTGCTGCAA CCTTAATGAG TTAAAGCAAC TCGTTGAGGA GTCAATTTTT
ATATACAATG AGCTGAGACC GCACTTAAGC TTGGGTATGA AAACACCTAA TCAAGTGCAT
AAAAAAGACC AGCAGCAGAA GCTACTGGTC TAG
|
|---|
| Protein sequence | MELAPVRAMI LDIRRFMPRI GGKKLYFLLK PKFIEKGIKL GRDNFFSYLK SEGLLVKPKR
NYTKTTNSKH WMKKHPNLLK ELVPTAPEEV FVSDITYVQS EQGIHYLSLV TDAFSRKIMG
YELSNEMKAT DVVKALEMTI SNRQYQHRAV HHSDRGLQYC SAVYQLALQR SDIRASMTDG
YDCYQNALAE RINGILKQEF LLSPCCNLNE LKQLVEESIF IYNELRPHLS LGMKTPNQVH
KKDQQQKLLV
|
|---|
| |