| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1838 |
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| Symbol | |
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| ID | 5662233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2235809 |
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| End bp | 2236900 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236428 |
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| Product | multidrug resistance efflux pump-like protein |
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| Protein accession | YP_001501696 |
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| Protein GI | 157961662 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000704068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTTA ATGTTATAAA CACCCCAAAG GTTAAATTTA AGCGGGGCAA TAAGTACTTC
AATTTCGCGC TTGGCTTTTC CATCGTCTTA TTGACCAGTT CAAGTGTCGT AACAGAGGCC
GTCGCCAGCA CTGAGTCTCA GAGCGTTGCT GCTTTGGCAA ATCATGGTTA TGCACCAAAT
GAAGGTGAAC TCATGCCTTT ACTGCTCACA GGCCAAGTCG CTTCAGTAGT TTCCCAAGCT
TTTATTGTAC CTAAGGCTGG CGATACCTGG CTTTACCAAA TTCAATGGAT GGCACCTGAA
GGTAGTCTGG TAAAACCTGG TGAAGTGGTG CTTATCTTCG ATAAAAGTGA AATTGACAGT
CGTATCGAGC AGTTGGAAGG AAGTTTATTA AGGGTGAAAG CCCAGGAGCA AAGCCAATCT
ATTGAGCTAA ATGCACAGTT ATTACAAGCA GAGTTTGAGT TGAAACAAGC TAAATTAGAG
CTTGAGAAGG CCGTACTCGA TGCCTCTGTT CCCGCCGATT TCATTGCCGC TAAAGATTAT
GCCGATTTTC AGTTTAATAA ATTGAAAGCC GAGTCTGAAT TGTCAAAGAA GCATCAAGCA
TTAGCCGAAA TTCAAGATAA GCGTAAGGCG TCATTGTCAC AGCTCTCAAT CGATAAACAG
CGTGCAGAGC TAGAGCTTGC TCAGGCGCTA TTAGGGCTTG AGCAACTAGA AATTCGCGCC
GATATTGCCG GGCCAGTACT TTATTCAAGA GATCCATGGA CAGATAAGAA ATATGCCGTA
GGAGACAATG CCAGAATAGG CAGGCAAGTG GTGACGATCC CTGCGTTAAA CAATCTCGAA
ATTATCGCTT GGGTAAATGA GGTGGATGTA GATCGTATTA AACTGGGAGA ACCTGTACGC
CTAAGGCTTG ATTCTCAAAC TCAAGTTACG CTCAGTGGTA ATGTTGCCGA CGTTAGCCGT
CAGGCTAAGA AGCAGCCTGC ATGGGGGAAC AGCAACTGGT TTAGAGTATC GATAAAATTT
AAGGTCGACA AGCGAGTGGA GATTATTCCA GGTATGAGCG TGTTAGTTGA AGCAGGAGTG
ACCCCCTCAT GA
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| Protein sequence | MPLNVINTPK VKFKRGNKYF NFALGFSIVL LTSSSVVTEA VASTESQSVA ALANHGYAPN
EGELMPLLLT GQVASVVSQA FIVPKAGDTW LYQIQWMAPE GSLVKPGEVV LIFDKSEIDS
RIEQLEGSLL RVKAQEQSQS IELNAQLLQA EFELKQAKLE LEKAVLDASV PADFIAAKDY
ADFQFNKLKA ESELSKKHQA LAEIQDKRKA SLSQLSIDKQ RAELELAQAL LGLEQLEIRA
DIAGPVLYSR DPWTDKKYAV GDNARIGRQV VTIPALNNLE IIAWVNEVDV DRIKLGEPVR
LRLDSQTQVT LSGNVADVSR QAKKQPAWGN SNWFRVSIKF KVDKRVEIIP GMSVLVEAGV
TPS
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