| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1799 |
|---|
| Symbol | |
|---|
| ID | 5662194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2195597 |
|---|
| End bp | 2197681 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236389 |
|---|
| Product | elongation factor G |
|---|
| Protein accession | YP_001501657 |
|---|
| Protein GI | 157961623 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0480] Translation elongation factors (GTPases) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00484] translation elongation factor EF-G |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000204091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATT TATCAAAGTA CAGAAACATT GGTATCTTTG CTCACGTTGA CGCGGGTAAG
ACTACTACAA CTGAGCGTAT CCTAAAGCTT ACTGGTAAAA TCCATAAGCT AGGTGAAGTG
CATGACGGCG AATCAACAAC TGACTTCATG GAACAGGAAG CTGAGCGTGG TATTACCATT
CAGTCTGCTG CTGTTAGTTG TTTCTGGAAA GATCACCGTT TCAACGTTAT CGACACCCCT
GGTCACGTTG ACTTTACAGT AGAAGTTTAC CGTTCTCTTA AAGTTCTTGA TGGCGGTATC
GGTGTATTCT GTGGTTCTGG TGGTGTTGAG CCACAATCAG AAACTAACTG GCGTTATGCT
AACGAATCTG AAGTTGCTCG TATCATCTTC GTAAACAAGT TAGACCGTAT GGGTGCTGAC
TTCTTACGTG TTGTTAAGCA AACTAAAGAC GTACTAGCTG CTAACCCACT AGTTATGGTA
CTTCCAATCG GTATCGAAGA TGAGTTCAGT GGTGTTGTTG ACCTACTTTC TCGTAAAGCA
TACGTATGGG ATGATACTGG TGAAGCTGAA AACTACACAG TAACTGACGT TCCAGCTGAC
ATGGTTGACC AAGTTGAAGA ATACCGTGAA ATGCTAATCG AGACAGCTGT TGAGATGGAC
GACGACCTAA TGGAATCTTA CATGGAAGGC GAAGAGCCAG CTATGGAAGA CATTAAGCGT
TGTATCCGTG CTGGTACTCG TGACATGACT TTCTTCCCAA CATACTGTGG TTCTGCTTTC
AAGAACAAAG GTATGCAGCT TCTTCTTGAT GCTGTTGTTG ATTACCTACC AAACCCAGTT
GAAGTTGATC CACAGCCTCT AACTGACGAA GAAGGTAACG AAAACGGTGA GTTCGCTTTA
GTTTCTATCG ACGAGCCACT AAAAGCACTA GCATTCAAAA TCATGGATGA CCGTTTCGGT
GCACTTACAT TCGTACGTAT CTACTCTGGT CAGCTACGTA AAGGCGACAC GATTCTTAAC
AGTGCAACTG GTAAGACTGA GCGTATCGGC CGTATGTGTG AAATGCAAGC TGATGAGCGT
AACGAACTTG ATTACGCACA AGCTGGTGAC ATCATCGCGA TCGTTGGTAT GAAGAACGTG
CAAACTGGTC ACACTTTATG TGATGTTAAG CACCCTTGTA CTCTTGAAGC AATGGTATTC
CCAGAGCCAG TTATCTCTAT CGCAGTAGCG CCAAAAGATA AAGGCGGTTC TGAGAAAATG
GGTATCGCTA TCGGTAAAAT GATTGCAGAA GATCCATCTT TCCGCGTAGA AACTGACGAA
GACTCAGGCG AAACTATCCT TAAAGGTATG GGTGAACTTC ACCTAGACAT TAAGGTAGAC
ATCCTTAAGC GTACTTACGG CGTTGAGCTA ATTGTAGGTG AGCCTCAAGT TGCTTACCGT
GAAACTATCA CTCGTGAAAT CGAAGATAGC TACACTCACA AGAAGCAATC TGGTGGTTCT
GGTCAGTTCG GTAAGATCGA CTACGTTATC CGTCCAGGCG AAGCTAACAC AGGCTTAACG
TTCAAATCTT CAGTTGTTGG TGGTAACGTT CCTAAGGAAT TCTGGCCAGC AGTTGAGAAA
GGTTTCGCTA GCATGATGAA CACCGGTACT GTTGCTGGTT TCCCTGTGTT AGACGTTGAA
TTCGAACTTA AAGATGGTGC TTTCCACGCA GTTGACTCAT CAGCTATCGC GTTCGAAATC
GCTGCTAAAG GTGCTTTCCG TCAATCTATG CCAAAAGCCG GTGCACAACT TCTTGAGCCT
ATCATGAACG TTGACGTATT CAGCCCAGAT GACAACGTTG GTGACGTAAT TGGTGACCTT
AACCGTCGTC GTGGTATGAT CAAAGACCAA AACGCTGGTG TAACTGGTGT TCGTATTAAG
GCTGACGTAC CGCTTTCAGA AATGTTCGGT TACATCGGTT CACTACGTAC TATGACTTCT
GGTCGTGGCC AATTCTCTAT GGAATTCGCT CACTACTCAC AGTGTCCAAA CAGTGTTTCT
GAAAAAGTTA TCGCTGACGT TAAAGAAAGA AACGCTAAGA AGTAA
|
|---|
| Protein sequence | MTDLSKYRNI GIFAHVDAGK TTTTERILKL TGKIHKLGEV HDGESTTDFM EQEAERGITI
QSAAVSCFWK DHRFNVIDTP GHVDFTVEVY RSLKVLDGGI GVFCGSGGVE PQSETNWRYA
NESEVARIIF VNKLDRMGAD FLRVVKQTKD VLAANPLVMV LPIGIEDEFS GVVDLLSRKA
YVWDDTGEAE NYTVTDVPAD MVDQVEEYRE MLIETAVEMD DDLMESYMEG EEPAMEDIKR
CIRAGTRDMT FFPTYCGSAF KNKGMQLLLD AVVDYLPNPV EVDPQPLTDE EGNENGEFAL
VSIDEPLKAL AFKIMDDRFG ALTFVRIYSG QLRKGDTILN SATGKTERIG RMCEMQADER
NELDYAQAGD IIAIVGMKNV QTGHTLCDVK HPCTLEAMVF PEPVISIAVA PKDKGGSEKM
GIAIGKMIAE DPSFRVETDE DSGETILKGM GELHLDIKVD ILKRTYGVEL IVGEPQVAYR
ETITREIEDS YTHKKQSGGS GQFGKIDYVI RPGEANTGLT FKSSVVGGNV PKEFWPAVEK
GFASMMNTGT VAGFPVLDVE FELKDGAFHA VDSSAIAFEI AAKGAFRQSM PKAGAQLLEP
IMNVDVFSPD DNVGDVIGDL NRRRGMIKDQ NAGVTGVRIK ADVPLSEMFG YIGSLRTMTS
GRGQFSMEFA HYSQCPNSVS EKVIADVKER NAKK
|
|---|
| |