| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1776 |
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| Symbol | |
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| ID | 5662171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2162881 |
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| End bp | 2164251 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236366 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001501634 |
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| Protein GI | 157961600 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAAAT TTAAAAATAA GAGGCCCATT GCTTGTAGAG AACTCCTTGT GCTTGACCTT
GCTGGTGAGT TTTTTGGCTA TGATAAAGAA CTCAAACCGT TTCGTTGGCA CTGCATTGTC
GCCGATACAC TTTCCTGTGC GAAAAAGGCA GCGCAAGCAT ACAATTTTCA GGTTGCTGTA
GCAGTCATAT CCAAAGGAAT TCAGCATCAG GTTCTAAGTT GTATCAATGA GCTCAATCAG
CGTCAACAGA ACATTATCTG GGTAGCCGTA TTAATCGATA TCGACGCAGT AGATGTAAAG
TTCACTTCTC GCCTACCCTA CTATTTTACC GACTATCACC ACCTTCCCGT CGACTGGAAC
CATCTTAACC AGACTCTTGG GCATGCTTAT GGCATGGCAC TGTTAAAACA GAAAGAGCAA
AAGGGTTGCA CTGAGTTCGG CCAAAAAACA CCATTATTGG GTGACTCTCG TTCCATCAAC
AATTTAAGAA GCAACATAAC CAAAGTAGCC ACATCAGATG AGGCCGTGCT GATCAGTGGC
GAAACCGGTA CGGGTAAAGG ACTGTGTGCA CATTTAATTC ATAATCAGTC AAGGCGAAAA
ATTGGTCCCT TCATCACTAT CAACTGTGGA GCCTTACCTC AAAGCTTGAT CCACTCTGAA
CTCTTTGGCC ACGAAAAAGG CGCCTTTACT GGCGCCGACA AACAATACAT AGGCCATATA
GAAAGAGCCA ATAAAGGTAC CCTGTTTTTA GATGAGATAG GTGATCTTAC ATTAGAGTCT
CAAGTGAACC TGCTACAATT TCTCGAAGAG CATATTATCG AGCGCCTCGG CGGCAGCAGG
AACATAGCCA TTGATTGTCG AATAATCTTC GCTTCCCATG TTAATCTTGA AACCGCTGTC
GAAGAGGGGC GCTTTCGTGA AGATCTCTAT TATCGCATCA ATATACTGCA CCTACACGCA
CCGAGTCTTA GGCAGCATAA AGAGGACATT CCGCTGCTCG CGAATGAGTA CCTTAATCTG
TTCAGTCCCG AACATCACAA ATACACCCTG ACCCCAAAAG CACTGGATAC CATGCTCGAT
TATGAATGGC CTGGCAATGT GAGGGAACTC AAGAACCGCA TACATAGAGC CATTATCATG
GCGAGTAGCG ATCAATTAAC TGCAGCGGAT TTAGGGATCA AAATCACCAA TATTAACCCG
GATGAACACG ATGTGGTTGA CTTAGCTCAG CATAGGGTGG TGATCGATAC CGAGCTACTA
CTCGATGCCA TCAAACGCAA TAACCACAAT ATTTCGGCTG CGGCGCGCGA GCTCAAGATC
TCCAGAACCA CCTTCTATCG TCTGATCAAG AAATGCAAAA TTAAACTCTA G
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| Protein sequence | MNKFKNKRPI ACRELLVLDL AGEFFGYDKE LKPFRWHCIV ADTLSCAKKA AQAYNFQVAV
AVISKGIQHQ VLSCINELNQ RQQNIIWVAV LIDIDAVDVK FTSRLPYYFT DYHHLPVDWN
HLNQTLGHAY GMALLKQKEQ KGCTEFGQKT PLLGDSRSIN NLRSNITKVA TSDEAVLISG
ETGTGKGLCA HLIHNQSRRK IGPFITINCG ALPQSLIHSE LFGHEKGAFT GADKQYIGHI
ERANKGTLFL DEIGDLTLES QVNLLQFLEE HIIERLGGSR NIAIDCRIIF ASHVNLETAV
EEGRFREDLY YRINILHLHA PSLRQHKEDI PLLANEYLNL FSPEHHKYTL TPKALDTMLD
YEWPGNVREL KNRIHRAIIM ASSDQLTAAD LGIKITNINP DEHDVVDLAQ HRVVIDTELL
LDAIKRNNHN ISAAARELKI SRTTFYRLIK KCKIKL
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