Gene Spea_1684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1684 
Symbol 
ID5662080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2043017 
End bp2044219 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content43% 
IMG OID641236271 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001501543 
Protein GI157961509 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.16221 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCGGATTC TAGTGGTCGA AGATAGCAAA ACGGTTTCGC GGGTGATGCG CCATTTGCTT 
ACTCAAGAGC TGAGTTGTGA GGTGGATGTT GCGCCAGATA TGGGCAGCGC AAAAGAGTTG
CTGGCCCAAA ATGAGTACTT TGTCGCGATT ACAGATCTGA ACTTACCAGA TGCTCAAGAG
GGAGAGATTG TTAAGTTTGT ATTGGCAAAA CAGATCCCCT GCATAGTGTT AACCGGAAGC
TGGGATGCCG AGCAACGAGA GCGTTTACTT CAGCTGGGTA TCGTTGATTA TGTCTTTAAA
GAAAATCGTT TTAGCTATGA ATATACTGCC AAGCTGGTTA AGCGTTTACG CCGCAATCAA
AGCGTAAAGG TACTGGTTGC CGATGACTCG CTTGTGAGCC GTAAATTTAT CCGAAGTTTA
TTGGAGCAGC ACCTTTTTCA AGTCATCGAG GCTGACGATG GTATTTCAGC GTTAGAAACC
CTTAATGATA ATCCAGATAT CAAACTACTT ATCACAGATT ACAATATGCC TGGCCTAGAT
GGATTCGGGC TTATTATTAA AGTTCGTGAA CAGTTTAGTC GTGAAGAGTT AGTGATTATT
GGCTTATCGA GTGACAGTGA TGAAAGCCTC TCTGCCCGTT TTATCAAAAA TGGCGCAAAT
GATTTTCTAC AGAAGCCTTT TGTCCACGAA GAGTTTCACT GCCGGGTGTT GAACACGTTA
GATGCACTGG ACATGGTGAC ACGGCTTTGG GAGCAGGCAA ACCTAGATTA TCTGACTAAT
GTTTATAATC GCCGTTATTT CTTTAATTTA TACCAAGAAA AGCTAACGGA AATTGCGCAG
AAACAGGGGA CACTGTCTCT GGCATTATTG GATATCGACT TTTTCAAGAA GGTAAACGAT
AGCTATGGTC ATGACGTGGG TGATGAAGTC TTGATTGAGT TTTCCAATCG ATTACAGCAA
TCTTTCTCAC AGCACTTTAA CGTTGCACGT ATTGGCGGCG AAGAGTTTGT GGTCGGATTT
AAAGGCCTTA ACGTCGAAAA GGCTTATGCG CTATTAGATA GTTTTCGTAT GCAGCTCGAA
GCCAACCCCA TTGAAACCTC TAAGGGCATG CTGAATATTA GCGTGAGTAG TGGAGTGGCG
GAGTTTACCC ATACAGAAAA TGTTGATGAG CTGCTTAATC GTGCCGACAT AGGCTTACTA
TGA
 
Protein sequence
MRILVVEDSK TVSRVMRHLL TQELSCEVDV APDMGSAKEL LAQNEYFVAI TDLNLPDAQE 
GEIVKFVLAK QIPCIVLTGS WDAEQRERLL QLGIVDYVFK ENRFSYEYTA KLVKRLRRNQ
SVKVLVADDS LVSRKFIRSL LEQHLFQVIE ADDGISALET LNDNPDIKLL ITDYNMPGLD
GFGLIIKVRE QFSREELVII GLSSDSDESL SARFIKNGAN DFLQKPFVHE EFHCRVLNTL
DALDMVTRLW EQANLDYLTN VYNRRYFFNL YQEKLTEIAQ KQGTLSLALL DIDFFKKVND
SYGHDVGDEV LIEFSNRLQQ SFSQHFNVAR IGGEEFVVGF KGLNVEKAYA LLDSFRMQLE
ANPIETSKGM LNISVSSGVA EFTHTENVDE LLNRADIGLL