| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1625 |
|---|
| Symbol | |
|---|
| ID | 5662022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1965468 |
|---|
| End bp | 1967486 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641236213 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_001501485 |
|---|
| Protein GI | 157961451 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTAT ATATTGCTGA AAAACCCAGC CTTGGTAGAG CTATTGCCGA TGTGTTGCCT
AAACCCTTAA AGAAAGGTGA TGGCTTTATT CGCGCCGCAA ATGGCGATTG TGTCTCTTGG
TGTGTCGGTC ATTTACTCGA ACAGGCTGAA CCAGATGCAT ACTCACCAGA GTACAAGTCA
TGGAAGTTCG AGCATCTGCC AATCGTGCCA GAGACCTGGA AGATGAAGCC TAAATATAAG
ATGCGCGGCC AGATAGCGGT GCTGCGAGGC TTAGTCAAAG AGGCGAGCCA GCTCGTAAAT
GCCGGCGACC CGGATAGAGA AGGGCAGCTA TTGGTCGATG AGATCATTGC CCACTTAGGC
GTAAAAGGCC CAAAATTGCA AAACGCGCAG CGTCTACTCA TCAGTGACTT GAATCCACAA
GCGGTGAAAA GGGCATTAGG GCAGTTACGC TCTAACCGCG AGTTTATTCC TCTGTCGACC
TCAGCCTTAG CGCGCTCTCG CGCCGATTGG CTCTATGGCA TGAATATGAC CCGGGCTTAC
ACCATTCAAG GGCGCAAAGT CGGCTATCAA GGCGTGCTGT CTGTTGGGCG GGTGCAAACT
CCTGTGCTGG GCTTAGTGGT TCGCCGCGAC GCCGAAATTG CCGAGTTTAT CTCTAAACCT
TTCTATGAGG TGTTGGCGCA TTTAGCGACC GATAATCAGC AGCGATTTAG TGCAAAATGG
CAACCAAGTG AGGCCTGCCA GCCTTATATG GATGAAGAGG GGCGAGTACT CTCAAAAGGG
TTAGCGCAAA ACGTAGTCGG GCGTATAAAT GGCCAAAACG GCACCGTAGA AAAGGTAACA
GCACAAGATA AGAAACAAAA TGCACCTTTG CCTTATAGCT TATCGGCACT GCAGATTGAT
GCGGCTAAAC GCTTCGGTAT GAGTGCAAAG TCAGTACTCG ATACCTGCCA GTCTTTATAT
GAAAAACATA AGCTTATCAC CTATCCCCGT TCAGATAGCC GTTATCTACC TGCTGAACAA
CATGCTTTGG CTCCGAGCGT CATAGGTGCC GTACTGAATG GTGCCAGTGA GTTAGTGTCA
GGCATAGAGC AACCTAATAG CAAGCTTAAA TCTAAGGCGT GGAATGATAA AAAGGTTGAG
GCTCACCACG CGATAGTGCC GACCGAGAAG ACCGCTAATT TACAAAACTT AAATCAGGCT
GAGAAGCAGT TGTATCTACA GGTTGCTCGT CAGTATTTGA TGCAATTTTA TCCTGCGTAT
CTTTATAAAG AGACTCAAGT TGAGATAATC ATTGCAGGTG GCTTATTTAA AACCAAGGCC
AAACAAGAGG TGGCATTGGG TTGGAAGCAA CTGCTTAAGC AAAATAAAGA GAAGAGCCAA
AGCGAAAAGC AACAAACTGA TGATGACGAG TATCTAGCCA ACATTCCCGC CCTAAAAAAG
GGCCAAATTC TGTTATGTGA GCGCGGTGAG TTACTGGAGA AACAGACTCA GCCACCAAAG
CACTTTAGCG ATGCCACTTT ACTGGGCGCG ATGACAGGGA TCAGCCGTTA TGTGACCGAC
AGTGAGATCC GCAAAATATT AAAGGAGACT GATGGGCTCG GTACCGAGGC GACTCGCGCT
GGGATCATCG AGTTGTTGTT TAAGCGAAAC TACCTAACGC GTCAAGGTAA GTCTATTTTA
GCGACAGAGG TAGGCAAGGG TTTGATAAAC AGCTTACCCC TGAGTGCGAC CACACCGGAC
ATGACGGCAC TTTGGGAAAA TAATCTCGAT GCTATTAGTC GTAAAGAGGC TAAATATCAA
AGCTTTATGG CGCCTTTATT AATATCACTG CAGCAGCTTA TCGAGCAGGC TGGGGCGCAG
TTACCCACCT CGTTGCAGGG CGTTAAATCT CCTGATAGCG GCTTTAAAAA GCGTCGTTAC
TCGGGCAATA AGAGTGCGGC TACGACAAAA TCGGCTACAG CTAAGAAAGC GTCAGCTAAA
AGAGTGAGTA CGACTAAGGC TAAGAGAGCG ACCTCCTAA
|
|---|
| Protein sequence | MILYIAEKPS LGRAIADVLP KPLKKGDGFI RAANGDCVSW CVGHLLEQAE PDAYSPEYKS
WKFEHLPIVP ETWKMKPKYK MRGQIAVLRG LVKEASQLVN AGDPDREGQL LVDEIIAHLG
VKGPKLQNAQ RLLISDLNPQ AVKRALGQLR SNREFIPLST SALARSRADW LYGMNMTRAY
TIQGRKVGYQ GVLSVGRVQT PVLGLVVRRD AEIAEFISKP FYEVLAHLAT DNQQRFSAKW
QPSEACQPYM DEEGRVLSKG LAQNVVGRIN GQNGTVEKVT AQDKKQNAPL PYSLSALQID
AAKRFGMSAK SVLDTCQSLY EKHKLITYPR SDSRYLPAEQ HALAPSVIGA VLNGASELVS
GIEQPNSKLK SKAWNDKKVE AHHAIVPTEK TANLQNLNQA EKQLYLQVAR QYLMQFYPAY
LYKETQVEII IAGGLFKTKA KQEVALGWKQ LLKQNKEKSQ SEKQQTDDDE YLANIPALKK
GQILLCERGE LLEKQTQPPK HFSDATLLGA MTGISRYVTD SEIRKILKET DGLGTEATRA
GIIELLFKRN YLTRQGKSIL ATEVGKGLIN SLPLSATTPD MTALWENNLD AISRKEAKYQ
SFMAPLLISL QQLIEQAGAQ LPTSLQGVKS PDSGFKKRRY SGNKSAATTK SATAKKASAK
RVSTTKAKRA TS
|
|---|
| |