Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1545 |
Symbol | |
ID | 5661942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1881397 |
End bp | 1882620 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641236133 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_001501405 |
Protein GI | 157961371 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0135691 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTTT CATTATCGTT TTATATTGGT TATCGCTACT GGCGATCCCG TAAAGCCAAC GCATTCGCAT CATTTATTAC TATTTTTTCT GTTTCTGGCA TTTTACTCGG TGTAGCGGCA TTGATTGTGG TCAGTTCGGT GATGAATGGC TTAGAGAACC AGCTTAAACA ACGAATTTTA GGGGCTGTGC CGCAATTAAC CGTGCACTCG CAAACGGCCA TCGAGAATTG GCCAAGCCAA GTGGAGAAAC TAAGCCAACT TCCGGGCGTT CAGGGCGCAA CCCCAAGTAT ATCGACCCAA GCCATGGTGC AGTCGCCGAG TAATATAGGC GCCGCGCAGG TGTATGGCAT CTATCCTGAG CAGGAAAAAA CACTACTAAA TACCACTAAG CGAGTTTACT CGGGAGATTT TGATGCCTTA GAGTCGGGGA AATACCGGGT TATTTTAGGC GCTGAGTTAG CCCGAACACT CGACGTTGCG CCTGGGGATA AAATTCGAAT TCTTAGTGGT GATGGCGTTG TGTATACGCC ATTGGGGCCG GTGCCGAGTC AACGTAAGTT CACCGTGGCG GGTGTTTTTG AAATGGGCTC ACAAGTCGAT GCGACTCTGG CCTATGTTCA TCATGATGAT GCTCAGCGAC TGATGCGTCA AAAGGCGGGA GAGGTCAAGG AGCTGCGTCT ATATCTCGAT GATCCTTTCA ATGCCGCCAA AATGGCGCCA GAGGTCGTTG CGCAATTTGC CACTCCCGTG ACGACGACCG ATTGGCGTGA CACCTATGGA CATCTGTTTG GGGCGGTGAA GATGGAAAAG AACATGATGT CTTTGATGCT TAGTCTCATT ATTGCCGTTG CAGCCTTTAA TATCGTTTCC GCCCTGGTGA TGATGGTGGT GGATAAAACT ACGGATGTTG CGGTACTCAA GACCCAAGGT CTGACGACGG CGAATGTGAT GGGCATTTTT ATGATCCAAG GCTCACTCAA CGCGGTCATA GGTCTTATAT CCGGCGTGGC AGTCGGCAGT TTATTAACCC TCAACCTCAA CACCATAACT CAGGCTCTTG GGATCTCTAT CTTGGGTGCA GGGCAGAATC TGCCTGTTCA ACTTGAGTTG AGTCAATTGA CTTGGATTGT TGTCGGCACC TTAGTGATGA CATTGGTGGC CACTGTTTAT CCTGCAATTA GAGCGGCTAA TGTGCAGCCA GCGGCCGCAC TCAGGTATGA GTAG
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Protein sequence | MNLSLSFYIG YRYWRSRKAN AFASFITIFS VSGILLGVAA LIVVSSVMNG LENQLKQRIL GAVPQLTVHS QTAIENWPSQ VEKLSQLPGV QGATPSISTQ AMVQSPSNIG AAQVYGIYPE QEKTLLNTTK RVYSGDFDAL ESGKYRVILG AELARTLDVA PGDKIRILSG DGVVYTPLGP VPSQRKFTVA GVFEMGSQVD ATLAYVHHDD AQRLMRQKAG EVKELRLYLD DPFNAAKMAP EVVAQFATPV TTTDWRDTYG HLFGAVKMEK NMMSLMLSLI IAVAAFNIVS ALVMMVVDKT TDVAVLKTQG LTTANVMGIF MIQGSLNAVI GLISGVAVGS LLTLNLNTIT QALGISILGA GQNLPVQLEL SQLTWIVVGT LVMTLVATVY PAIRAANVQP AAALRYE
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