| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1543 |
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| Symbol | |
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| ID | 5661940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1877030 |
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| End bp | 1880503 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641236131 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001501403 |
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| Protein GI | 157961369 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00144396 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCTT TTTCTGTATT GACTCCACCA GCGGTCAAGA GTGCCAAACT GGCCCAAACG
CTGTGTACAC TGGGCGGCGC GGCACAAGCG CTAACCATCG CGAATATTGC TAAGCAACAT
CTAGGGGTGA CCTTAGTGGT GACCGCGGAT ACGCCTAACG CAATCAGCCT AGAAACTGAG
CTTAGCTACC TGCTCAGTGA GCAATCAATA CCGATCTGGC TTTTTCCCGA TAGAGAAACA
CTTCCCTACG ACAGCTTCTC ACCGCACCAA GACTTAGTCT CACAGCGACT TGAAGCGTTA
TCGCGTATTC CTCAGGCGCA ACACGCCGTT GTCATTGTCC CGATCACTAC ACTCATGGTG
CGCCTGCCGC CACAATCGTT CCTAACAGGT AACGTGTTGA TGCTGGAAAA AGGTGACAAA
TACCGCCTAA TGGATGTTCG TGAACAGCTC ATTAACACTG GCTATCATGT GGTTGAGCAA
GTTTATGAAC ATGGCGAATT TGCCGTGCGT GGCTCTATCA TCGATATTTT CCCTATGGGA
TCGAGCCAAC CCTTTAGAAT CGAGTTATTC GACGATGAAG TGGAAACCAT TCGACATTTC
GATCCAGAAA CTCAGCGCTC GAGTAAAGAG ATAAATGCAA TTCGTCTGTT ACCGGCGAAA
GAGTTCCCTA CCGATGACGC GGCGATTGAA GGCTTTAGAC AAAGATACCG CCGCCGCTTC
GAGGTATTAG TCAAAGAGCC TGGCTCGATT TATCAGATGG TCAGTAAGAA GACCATGCCG
GCCGGTATTG AAAACTATCT GCCACTGTTT TTTGATGAGA CCTCGACTCT GTTTGATTAT
CTGCCGAGTA ATACTCAGCT GATCACCCTA GGCGATATTG AAGCGGCGAC TCACTCACAC
CTTCATGAAG TCGAAGTGCG TTATGAAGAC AGGCGTGTCG ACCCATTAAG GCCGCTACTG
ACGCCACAAG AGTTATATTT GCTTACCGAG CAGATCTTCT CAGCTTTTAA AGGCTATCCT
CGCTTTGGGC TTAAAGATGA AGCCTACACA GGCACGGCAG CCCATGCTAA AGCCAGTAAG
TTACCGGAAA TTGGCGCAAA CCATAAACTC AAACAGCCGT TAGCCGAGCT GGAAAAATAC
GCAGCACTTG GCGATAGAAT GTTATTTAGC GCCGAATCTG AGGGACGCCG CGAAGCGCTT
TTAGAGCTAC TTAGCAAGAT CAACATTAAG CCTAAGCTGT TTAATCACTT CGACGAGTTT
GTAGCCAGCA AGGCAAAAGT AGGACTGATA GTGTCTCCTC TTGCTCAAGG CTGCATCATT
GAGAAGAAAA CCGGCGGCAA GTTCAGTTTA ATTTGTGAAA CTGAGCTATT TGGTCAACGG
ATCTCACAGC GTCGCCGCCG TGATAAACAG CGTCAGATCA GCTCAGATGC TCTGGTTAAA
AACTTGGCCG AGCTCAAAGT GGGTCAACCT ATTGTTCACT TAGATCATGG TGTAGCGCGC
TATCAAGGTT TAGAAACCTT AGATACTGGC GGCTTAGTCG CCGAGTATTT GGTGCTTGAA
TACTCAGGTG GCGATAAGCT GTATGTGCCC GTAGCAGCAC TTAATTTAAT CAGCCGTTAT
AGCGTTGGTC CCGATGAAGA GGCGACGCTC AATAAACTCG GTAATGAAAG CTGGGCTAAG
GCCAAGAAAA AAGCGGTTGA GAAGATTCGC GATGTCGCCG CCGAGCTACT GGATGTCTAC
GCTCGCAGAC AAGCAAGACC CGGTGAAGCT TGTCGAATCG ACCTAGAAGA GTACGCGCAG
TTTGCCAATA GCTTTCCCTA TGAAGAGACA GTTGACCAAG AGACTGCCAT CGAAGCTGTT
CTGGAAGATA TGCGCTCACC TACAGCCATG GACAGACTGG TTTGTGGTGA TGTGGGCTTT
GGTAAGACCG AGGTTGCCAT GCGCGCCGCT TTCGTCGCGG TAAACGATGG TAAACAGGTC
GCCATTTTAG TGCCTACTAC CCTACTCGCT CAGCAGCATT ACGAGAACTT TAAAGACAGA
TTTGCCGACT GGCCATTCAA GATTGAGGTA ATGTCGCGCT TTAAGACTGC GAAAGAGCAG
ACTCAAGTGA TGAAAGAGCT GCTCGATGGT AAAGTCGATA TCGTGATCGG TACTCATAAA
CTGCTGCAGT CTGAGGCCAA GTTTGAAAAC TTAGGCTTGC TAGTCATCGA TGAAGAACAC
CGTTTTGGGG TAAGACAGAA AGAGAAGATT AAGGCGCTCA GAGCCAATGT CGATATTTTA
ACCTTAACCG CCACGCCAAT CCCACGTACC TTGAATATGG CAATGTCGGG CATGCGTGAT
CTGTCGATTA TAGCCACTCC TCCGGCTAAA CGACTCGCTG TCAAAACCTT CGTTAGAGAA
TACGATGAAG CCACCATTCG TGAAGCTTTG CTTCGTGAGA TCTTAAGGGG TGGCCAAGTC
TACTTCCTGC ACAATAGCGT CGAAACCATC GAAAAACGCG CGGCTGAGAT AAGCGAACTC
CTGCCTGAAG CGCGAGTAGT GACAGCCCAC GGTCAGATGC GTGAGCGTGA GCTTGAGCGA
GTAATGTCAG ATTTTTATCA TCAACGCTTT AACGTGTTGG TGTGTACCAC CATCATTGAA
ACCGGTATCG ACGTGCCATC GGCCAATACC ATAGTGATTG AGCGTGCCGA TAACTTTGGT
CTGGCTCAGT TGCATCAGTT ACGTGGCCGT GTAGGACGGT CTCATCATCA AGCCTATGCT
TATTTGATGA CGCCTCATCC AAAAAGTATG ACCAAAGATG CCCGCAAGCG TCTAGAAGCC
ATCGGTGCAT TAGAAGATCT CGGTGCGGGC TTTATGCTTG CAACCCAAGA CTTGGAAATT
CGCGGCGCAG GCGAGCTGCT TGGCGATGAA CAAAGTGGTC ATATCTCCAA GATTGGTTTT
ACCCTCTACA TGGAAATGTT AGAAGATGCG GTGAAATCAC TTAAGCAAGG TAAAGAGCCG
TCGCTAAACC AGATGCTGCG TCATCAATGT GAAGTCGAGC TGCGAATTCC TGCGCTACTG
CCTGAAGATT ATGTGGGTGA CGTGAATATT CGTCTATCTC TGTATAAGCG AATTGCTAAC
TGCGAAACCG CAAAAGCGCT CGATGAAATG AAAGTTGAAT TGATTGACCG CTTCGGTATG
TTACCCGATG CGACTAAGAA TCTTATGGAG ATGACACTTT ATAAGCACTT GGCCACACAG
TTAGGCTTAA GAAAAATCGA AATGCACGCT AAAGGTGGTA GTATAGAGTT CGGTGAAAAC
AATAAGGTTG ATCCAACCTT CATCATCGGT TTGCTACAGA GCCAGCCCCA AGTATATCGA
ATGGACGGCC CCAATAAGCT AAAATTTGCA ATGCCTTCTG AAACAGCGAA AGACAGGCTC
GCACTACTTA AACTGTTAAT TGAGCAGTTG TTTCAACATC GTCTTGGAGA ATAA
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| Protein sequence | MNSFSVLTPP AVKSAKLAQT LCTLGGAAQA LTIANIAKQH LGVTLVVTAD TPNAISLETE
LSYLLSEQSI PIWLFPDRET LPYDSFSPHQ DLVSQRLEAL SRIPQAQHAV VIVPITTLMV
RLPPQSFLTG NVLMLEKGDK YRLMDVREQL INTGYHVVEQ VYEHGEFAVR GSIIDIFPMG
SSQPFRIELF DDEVETIRHF DPETQRSSKE INAIRLLPAK EFPTDDAAIE GFRQRYRRRF
EVLVKEPGSI YQMVSKKTMP AGIENYLPLF FDETSTLFDY LPSNTQLITL GDIEAATHSH
LHEVEVRYED RRVDPLRPLL TPQELYLLTE QIFSAFKGYP RFGLKDEAYT GTAAHAKASK
LPEIGANHKL KQPLAELEKY AALGDRMLFS AESEGRREAL LELLSKINIK PKLFNHFDEF
VASKAKVGLI VSPLAQGCII EKKTGGKFSL ICETELFGQR ISQRRRRDKQ RQISSDALVK
NLAELKVGQP IVHLDHGVAR YQGLETLDTG GLVAEYLVLE YSGGDKLYVP VAALNLISRY
SVGPDEEATL NKLGNESWAK AKKKAVEKIR DVAAELLDVY ARRQARPGEA CRIDLEEYAQ
FANSFPYEET VDQETAIEAV LEDMRSPTAM DRLVCGDVGF GKTEVAMRAA FVAVNDGKQV
AILVPTTLLA QQHYENFKDR FADWPFKIEV MSRFKTAKEQ TQVMKELLDG KVDIVIGTHK
LLQSEAKFEN LGLLVIDEEH RFGVRQKEKI KALRANVDIL TLTATPIPRT LNMAMSGMRD
LSIIATPPAK RLAVKTFVRE YDEATIREAL LREILRGGQV YFLHNSVETI EKRAAEISEL
LPEARVVTAH GQMRERELER VMSDFYHQRF NVLVCTTIIE TGIDVPSANT IVIERADNFG
LAQLHQLRGR VGRSHHQAYA YLMTPHPKSM TKDARKRLEA IGALEDLGAG FMLATQDLEI
RGAGELLGDE QSGHISKIGF TLYMEMLEDA VKSLKQGKEP SLNQMLRHQC EVELRIPALL
PEDYVGDVNI RLSLYKRIAN CETAKALDEM KVELIDRFGM LPDATKNLME MTLYKHLATQ
LGLRKIEMHA KGGSIEFGEN NKVDPTFIIG LLQSQPQVYR MDGPNKLKFA MPSETAKDRL
ALLKLLIEQL FQHRLGE
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