Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1535 |
Symbol | |
ID | 5661932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1867129 |
End bp | 1869819 |
Gene Length | 2691 bp |
Protein Length | 896 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641236123 |
Product | DNA topoisomerase I |
Protein accession | YP_001501395 |
Protein GI | 157961361 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.351865 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAAAT CGCTAGTAAT CGTCGAATCA CCGGCCAAAG CCAAGACTAT TAATAAATAT CTAGGCAAAG ATTTCATCGT TAAGTCGAGT GTAGGTCACA TCCGTGATCT GCCAACATCA TCGAGTTCAG ACGCTAAAGT TGTCAGTAAG ACAGCTGCTG AAGTCAAAAA GATGTCTCCA GAGGAGAAGG CTGAGTATAA GAGTTTAAAA GCGAAGCAAG CTTTAGTTGC GCGCATGGGG GTCGATCCAG AAAAAGGCTG GAAAGCAAAC TATCAAACCT TACCAGGCAA AGAAAAAGTC GTTAAGGAAC TCCAAACTCT GGCAGCGTCT GCTGACCATA TCTATCTCGC AACCGATTTG GATAGAGAGG GAGAGGCGAT AGCTTGGCAT CTACAGCAAG TGATTGGTGG AGATGAGTCA CGTTATCAGC GAGTAGTTTT TAACGAAATT ACCAAGACAG CGATTCAAGA TGCATTTAGC CAGCCATCGG TGCTAGACAC CAATATGGTT AATGCACAAC AGGCGCGTCG CTTCTTAGAC CGTGTTGTTG GCTTTATGGC TTCTCCACTA TTATGGAAGA AGGTCGCCCG CGGTCTGTCT GCTGGGCGTG TACAGTCTGT TGCCGTCCGC CTTGTGGTTG AACGCGAAAG TGAGATTAAA GCCTTTGTGC CAGAAGAGTT CTGGGATGTT CATGCTGAAC TCAATACCTT AACCGACGAC CTGCTAAAAA TGCAGGTGGT TAAATTCCAA GGTAAAGCAT TCAGCCCTGT CAACGAAGTC GAAGCGCAAA CTGCAGTTAG TCAGTTATCT CAGTCCAGCT TTGTGGTTGC CGCTCGTGAA GACAGAGCGA CATCGAGCAA ACCATCGGCA CCTTATATTA CATCGACGTT ACAGCAAGCT GCGAGTACGC GCTTAGGCTT TGGTGTGAAG AAGACTATGA TGATGGCACA ACGCTTGTAT GAAGCGGGCC ACATCACTTA TATGCGTACC GACTCGACTA ACTTAAGCCA AGAAGCGCTC GATAACGTGC GTGACATGAT TGGTAAAGAG TATGGCGACA ACTACCTGCC TGAATCACCT ATTCGTTATG GCAGCAAAGA AGGCGCACAA GAAGCCCACG AAGCGATTCG TCCTTCAAAT GTAAAAGTGA GTGCAGCGTC GCTATCAGAC ATGGAGCGGG ACGCACAGCG CCTATACGAG CTTATTTGGC GTCAGTTTGT GTCTTGTCAG ATGACACCTG CAAAATATGA TGCGACTCGC CTGACTGTAA AGGCAGGTGA TTATGAGCTT AAAGCAACGG GTCGTACGCT TCGTTTCGAT GGTTGGACGC GCGTTCAAAC TGCCATTAAG AAGAAAAATG AAGAAGACAA CACTTTGCCA TACGTGGCAC AAGGTGATGC CGTCACGCTA AAAGAGCTAC TACCTAAGCA GCACTTTACT AAACCTGCAC CACGTTACAG TGAAGCGTCT TTGGTTAAAG AGTTAGAAAA GCGTGGTATT GGTCGTCCAT CTACTTACGC TACGATCATT TCAACTATCC AAGACCGTGG TTATGTGAAA GTTGATAACC GTCGCTTCTT TGCAGAAAAG ATGGGTGAAA TCGTTAGTGA TAGCTTAGTG GGTAGCTTTG AAGATCTAAT GAGCTACGAC TTCACTGCTA GCATGGAGCA AACATTAGAT GATGTTGCTC AAGGTAAGCT TGAGTGGAAA AAAGTACTCG ATGGTTTCTA TAAAGACTTC ACTAAACAAT TAGAAGTCGC TGAATTACCA CCGGAAGAGG GCGGAATGCG CCCGAACGAA ATGGTGATTA CCGATAACAT CAAGTGTCCA ACCTGTGGCC GCCCTATGGG CATTCGTACC GGTACGACTG GTGTATTCCT AGGTTGCTCT GGTTATGCAT TACCACCAAA AGAGCGCTGT AAAACAACGT TGAACTTAAC GCCTGGTGAA GAGGCTGTGA GTAGCGGTGA AGACGCTGAA ACTGAAGCTC TACGTGCTAA GCATCGCTGT GGGATCTGTG GCACAGCCAT GGATAGTTAC TTAATCGATG AAGCTCGTAA ATTACACGTA TGTGGTAACA ACCCAACATG TAATGGTTAT GAGGTAGAAG CGGGTCAGTT TAAGATTAAA GGTTACGAAG GGCCTATTAT TGAGTGCGAT CGTTGTGGCA ACGATATGGA GCTTAAAAAC GGTCGTTTCG GTAAGTATTT TGGTTGTACA AACACTGAGT GTAAGAACAC GCGTAAGCTG CTTAGGAGCG GTGAGGCTGC GCCACCAAAA GAAGACCCTA TTCACTTACC TGAACTTAAG TGTACTAAGT CTGATGCATA TTTCGTGTTA AGAGATGGTG CGGCGGGGAT CTTCCTTGCG GCGAGCACAT TCCCTAAATC ACGAGAGACT CGTGGCCCGT TAGTCGAAGA GCTAGTGAAG TACCGTGAGC TGTTATGGCC TAAGTACCAG TATCTTGCCG ATGCGCCAGT GGCTGACGAT GACGGTAATC TTGCATCTGT ACGCTTTAGC CGTAAGACTA AAGAGCAGTA CGTTGCAACA GATGTTGATG GTAAGGCGAC TGGCTGGACA TCAAAGTTTG TTGATGGCAA GTGGGTGACA GAGGCAAAAG CCAAGCCTAA GCCTAAGGCC AAAGCAAAAC CTAAAGCCAA GCCAAAAGCT AAGGCGACCA AAGCCGAGTA A
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Protein sequence | MGKSLVIVES PAKAKTINKY LGKDFIVKSS VGHIRDLPTS SSSDAKVVSK TAAEVKKMSP EEKAEYKSLK AKQALVARMG VDPEKGWKAN YQTLPGKEKV VKELQTLAAS ADHIYLATDL DREGEAIAWH LQQVIGGDES RYQRVVFNEI TKTAIQDAFS QPSVLDTNMV NAQQARRFLD RVVGFMASPL LWKKVARGLS AGRVQSVAVR LVVERESEIK AFVPEEFWDV HAELNTLTDD LLKMQVVKFQ GKAFSPVNEV EAQTAVSQLS QSSFVVAARE DRATSSKPSA PYITSTLQQA ASTRLGFGVK KTMMMAQRLY EAGHITYMRT DSTNLSQEAL DNVRDMIGKE YGDNYLPESP IRYGSKEGAQ EAHEAIRPSN VKVSAASLSD MERDAQRLYE LIWRQFVSCQ MTPAKYDATR LTVKAGDYEL KATGRTLRFD GWTRVQTAIK KKNEEDNTLP YVAQGDAVTL KELLPKQHFT KPAPRYSEAS LVKELEKRGI GRPSTYATII STIQDRGYVK VDNRRFFAEK MGEIVSDSLV GSFEDLMSYD FTASMEQTLD DVAQGKLEWK KVLDGFYKDF TKQLEVAELP PEEGGMRPNE MVITDNIKCP TCGRPMGIRT GTTGVFLGCS GYALPPKERC KTTLNLTPGE EAVSSGEDAE TEALRAKHRC GICGTAMDSY LIDEARKLHV CGNNPTCNGY EVEAGQFKIK GYEGPIIECD RCGNDMELKN GRFGKYFGCT NTECKNTRKL LRSGEAAPPK EDPIHLPELK CTKSDAYFVL RDGAAGIFLA ASTFPKSRET RGPLVEELVK YRELLWPKYQ YLADAPVADD DGNLASVRFS RKTKEQYVAT DVDGKATGWT SKFVDGKWVT EAKAKPKPKA KAKPKAKPKA KATKAE
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