Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1187 |
Symbol | ispD |
ID | 5661586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1441729 |
End bp | 1442424 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641235739 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | YP_001501049 |
Protein GI | 157961015 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAAA CACCCAAGCA CATAATCTCG ATAGTCCCCG CTGCTGGTAT AGGCAGTCGT ATGGGCGCAG AAATTCCAAA GCAATATTTA CAACTTAATG AACAAAGCAT TTTAGGGCAT ACGCTGGACT GCTTATTATC GCATCCTAGT ATCGAAAAGG TGATCGTGGC GCTTAACCCT GAAGATGAGT TCTTTGCGCG CTTGCCTCAA GCTCAGCATG CCAAACTACA GGCTGTAATT GGTGGTAAAG AGCGCGCAGA CTCAGTGCTG TCGGCTTTAA CTGTGGCACC AACGGATGCC TGGGCGCTAG TGCATGATGC GGCGCGTCCG TGCTTAAACC ATCAAGACAT AGATAAGTTA ATCGAGTCAG CATCTAGCTT TCCACAAGGC GCTATTCTAG GAGCCCCTGT GCGTGACACC ATGAAGCGTA GTAATGCACA GGGCTTAATT ACCGAAACGG TTTGCCGCGA AAAGCTGTGG CATGCACTCA CACCGCAGTT TTTTCCTGTG CAGAATCTAA AGCAAAATCT CAGTAATGCT TTAGCCGCAG GCGCATTAAT TACCGATGAG GCTTCGGCTA TGGAGTGGGC TGGTGTTGCT CCAGGCATTG TTGCTGGTCG CGCCGACAAT ATTAAGGTGA CCCATCCAGA CGATCTGCAG CTAGCCTCGC TATTTCTTAA AAGTGCAGCT CAATAG
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Protein sequence | MSQTPKHIIS IVPAAGIGSR MGAEIPKQYL QLNEQSILGH TLDCLLSHPS IEKVIVALNP EDEFFARLPQ AQHAKLQAVI GGKERADSVL SALTVAPTDA WALVHDAARP CLNHQDIDKL IESASSFPQG AILGAPVRDT MKRSNAQGLI TETVCREKLW HALTPQFFPV QNLKQNLSNA LAAGALITDE ASAMEWAGVA PGIVAGRADN IKVTHPDDLQ LASLFLKSAA Q
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