| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1155 |
|---|
| Symbol | |
|---|
| ID | 5661554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 1396442 |
|---|
| End bp | 1399552 |
|---|
| Gene Length | 3111 bp |
|---|
| Protein Length | 1036 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641235707 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001501017 |
|---|
| Protein GI | 157960983 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00884759 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTTGT CTGATGTTTC AGTAAAACGC CCTGTCGTCG CCATCGTACT GAGTTTGCTG
CTGTGTGTTT TTGGCGCGGT GTCATTTACT AAGCTTGCCG TGCGCGAGAT GCCCGATGTA
GAAAGCCCTG TGGTAACTGT GATGACCACC TATGAGGGCG CATCGGCGAC CATCATGGAG
AGTCAGATCA CCACGGCACT CGAATCGGAA TTGACCGGTA TTAGTGGTGT TGATCAAATT
GAATCTGTCA CCCGTAACGG CATGTCACGT ATTACCGTGA CCTTCCTGCT GGGCTGGGAT
CTCACCGAAG GTGTCAGCGA TGTGCGTGAC GCAGTGGCCC GTGCTCAGCG CCGCCTGCCT
GACGAAGCCA AAGATCCTAT CGTCTCTAAA GACAACGGCT CTGGTGAGCC TGCGGTTTAT
GTCAATTTAA GCTCATCGGT TATGGATAGA ACCCAATTAA CCGATTACGC CCAGCGGGTA
CTAGAAGACA GATTTAGCCT TATCTCAGGC GTTAGTAGCG TCGATATATC AGGTGGTTTA
TACAAGGTCA TGTATGTGCA ACTCAATCCT GAGCTGATGG CGGGACGCAA TATTACCGCT
AGCGATATTG TCAGTGTATT AAATAGAGAA AACGTTGAGA CGCCTGGCGG TGAAGTGCGT
AACGACACCA CTGTGATGGC AGTGCGTACA GCGCGCTTAT ATCAAACTCC AGATGACTTT
AATTACTTGG TACTTCGCAC CGCCGCCGAT GGCTCACAGG TATATCTCAA AGATGTCGCC
AATGTGTTTA TTGGTGCAGA GAACGAAAAC TCGACCTTTA AGAGCGATGG CGTCGTTAAT
ATTAGCTTAG GCATTGTGCC TCAATCTGAT GCTAACCCGC TTGAGGTCGC ACAAGATGTA
CATAAAGAGG TCGATCAGAT ACAGAAGTTC CTCCCCGAAG GCACAAAACT GATTGTCGAC
TATGACTCGA CCGTATTTAT CGACCGCTCC ATCGATGAGG TTTTTAGTAC CTTAGCAGTA
ACGGCACTGC TGGTGATCTT AGTGCTGTAT ATCTTCATCG GCCAAGCCAG AGCCACGCTG
ATCCCTGCGG TCACGGTTCC AGTATCACTG ATTTCAGCCT TTATCGCAGC GAACGTGTTT
GGCTACTCTA TTAACCTACT GACCCTGATG GCACTTATCT TGTCGATCGG CCTAGTGGTG
GACGATGCCA TCGTTGTTGT CGAGAATATC TTCCATCATA TTGAAAAGGG CGAGCCGCCA
ATCTTGGCCG CCTATAACGG TACAAGAGAA GTGGGCTTTG CGGTGATGGC GACAACTGCC
GTCTTGGTGA TGGTGTTCCT ACCTATCTCC TTTATGGAAG GCATGGTCGG CCTGCTCTTC
ACTGAATTCT CGGTCATGCT GGCCGTATCG GTGCTATTTT CATCGCTGAT TGCCCTCACC
TTAACCCCGG TACTCGGCAG TAAAATTCTC AAGGCGAACG TTAAACCGAA TCGTTTTAAC
GTTTGGGTAG AATCAATCTT TACTCGCCTT GAAAACTTCT ACCGCAAGAT GGTGACTAAA
GCCGTTACCC TTAGACTCGC TGCGCCACTG GTGATTATCG CCTGTATCTT GGGAAGCGGC
TGGTTAATGC AGCAGGTACC TGCGCAACTT GCGCCACAAG AAGATAGAGG GGTGATTTTT
GCCTTTATTA AAGGCGCCGA AGGCACTAGC TATAACCGTA TGGCTGCCAA TATGGAGATA
GTCGAAGACA AGCTAATGCC GTTACTTGGT CAAGGCGTAG TGAAATCATT CAGCATTCAA
GCTCCTGCTT TTGGTGGCCG TGCAGGCGAT CAGACCGGCT TTGTAATTAT TCAACTTGAA
GATTGGAATG AACGTACTGT TAATGCTCAG CAAGCATTAG GCATAGTGGC CAAGGCATTA
AAAGGCATTC CCGATGTGAT GGTGCGTCCA TTACTGCCTG GCTTTAGAGG CGGCTCAAGT
GAGCCGGTGC AATTTGTACT CGGCGGCTCA GATTATCAAG AGCTATTCAA ATGGGCGCAA
ATGCTAGAAG AGGAAGCCCT TTATAGCCCT ATTCTGGACA GCCCAGAGAT CGACTATAAA
GAAACTTCAC CTGAGCTTGT CGTCACGGTC GATAAAGAGC GTGCCGCCCA GCTTGGAATT
AGCGTGGCAG AAGTCTCTGA AACACTCGAG ATCATGCTAG GTGGCCGCAG TGAAACCACC
TTTGTTGAGC GTGGTGAAGA GTATGATGTC TACCTTCGTG GCGATGAGAA TAGCTTCAAT
AACGTGGCTG ATTTAAGCCA GATCTATATG CGTTCAGCTA AAGGCGAGCT CATTACTTTA
GATACCATTA CCCATATTGA AGAGGTGGCA TCGGCGCTCA AACTGAGCCA TAACAACAAG
CAGAAATCGA TCACCTTAAA GGCGAATTTA GCTGAAGGTT ATACCTTAGG TGAAGCGCTG
GACTTCTTAG ATCAAAAAGC GATTGAGATG TTACCAAGCG ATATTTCGGT GGCTTATACC
GGCGAGTCTA AAGACTTTAA GGAAAATCAA AGCAGTATCT TTATTGTATT TGGTTTAGCC
TTGTTGGTTG CCTATCTTGT ATTAGCTGCT CAGTTTGAAA GTTTCATCAA CCCGCTAGTG
GTGATGTTTA CCGTGCCTAT GGGCGTATTC GGAGGATTTT TAGGCTTGTA CCTAACCGGC
CAAGGGCTGA ACATCTACAG CCAGATTGGT ATGATCATGC TAATTGGTAT GGTAACCAAG
AACGGCATCT TAATTGTCGA GTTTGCTAAC CAACTGCGGG ACAGAGGCCT TGAAATTGAG
CAAGCTATTA TCGATGCCTC GGTAAGACGT TTACGCCCTA TTTTGATGAC GGCCTTTACC
ACACTGATTG GCGCTATCCC GCTTATTCTA TCAACGGGTG CTGGCGCTGA GAGCCGAATA
TCAGTGGGTA CTGTGGTCTT CTTTGGTATG GCGTTTGCGA CTTTCGTAAC CTTACTGGTG
ATCCCAGCCA TGTATCGCTT AATCTCTGCT GCGACAAAGT CACCTGGTTT TGTTGAGTCT
CAGCTTAATC AAGCTATTGC AGATCAGCAA AACTTAGCCG CTAAACAGTA A
|
|---|
| Protein sequence | MWLSDVSVKR PVVAIVLSLL LCVFGAVSFT KLAVREMPDV ESPVVTVMTT YEGASATIME
SQITTALESE LTGISGVDQI ESVTRNGMSR ITVTFLLGWD LTEGVSDVRD AVARAQRRLP
DEAKDPIVSK DNGSGEPAVY VNLSSSVMDR TQLTDYAQRV LEDRFSLISG VSSVDISGGL
YKVMYVQLNP ELMAGRNITA SDIVSVLNRE NVETPGGEVR NDTTVMAVRT ARLYQTPDDF
NYLVLRTAAD GSQVYLKDVA NVFIGAENEN STFKSDGVVN ISLGIVPQSD ANPLEVAQDV
HKEVDQIQKF LPEGTKLIVD YDSTVFIDRS IDEVFSTLAV TALLVILVLY IFIGQARATL
IPAVTVPVSL ISAFIAANVF GYSINLLTLM ALILSIGLVV DDAIVVVENI FHHIEKGEPP
ILAAYNGTRE VGFAVMATTA VLVMVFLPIS FMEGMVGLLF TEFSVMLAVS VLFSSLIALT
LTPVLGSKIL KANVKPNRFN VWVESIFTRL ENFYRKMVTK AVTLRLAAPL VIIACILGSG
WLMQQVPAQL APQEDRGVIF AFIKGAEGTS YNRMAANMEI VEDKLMPLLG QGVVKSFSIQ
APAFGGRAGD QTGFVIIQLE DWNERTVNAQ QALGIVAKAL KGIPDVMVRP LLPGFRGGSS
EPVQFVLGGS DYQELFKWAQ MLEEEALYSP ILDSPEIDYK ETSPELVVTV DKERAAQLGI
SVAEVSETLE IMLGGRSETT FVERGEEYDV YLRGDENSFN NVADLSQIYM RSAKGELITL
DTITHIEEVA SALKLSHNNK QKSITLKANL AEGYTLGEAL DFLDQKAIEM LPSDISVAYT
GESKDFKENQ SSIFIVFGLA LLVAYLVLAA QFESFINPLV VMFTVPMGVF GGFLGLYLTG
QGLNIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGLEIE QAIIDASVRR LRPILMTAFT
TLIGAIPLIL STGAGAESRI SVGTVVFFGM AFATFVTLLV IPAMYRLISA ATKSPGFVES
QLNQAIADQQ NLAAKQ
|
|---|
| |