Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0983 |
Symbol | |
ID | 5661382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 1196074 |
End bp | 1197795 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641235529 |
Product | chloride channel core |
Protein accession | YP_001500845 |
Protein GI | 157960811 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0038] Chloride channel protein EriC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.20295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAAATTC CTGTGCATCC AGCAATTGTT AAGAAGCGAG AGCAATTTCA AAAGTACTTA CATACCGACC TTAAAGACAC GCTTTCTCAG TCTAAGGTCA GTGTACAGTT ATGTTTGCTC GCGTTGCTTT TTGCACTGTT TGCATCCGGT GTCATTGTTC TTTTTAGGTT ATTACTGGTC TGGTGCGACA CCTTCACCAA AACCCAAGAG CTGAATTTTA CGGACATCAT CGATGACTGG CGAGTATTAT TACCGCTTTT CGGCTCCTTT TTAATCTGGG GTGTCGCAAA AATGGGATCT CAGCGCTATA AACGTATGGG CATCGCCTAT GTTATCCACA GAATGAAACT GCATTATGGC AAGATCCCGC TGCAGTCTGC CCCCGGACAA TTTTTCCAAG CTTTATTTGC CCTTGCCACC AACTTCTCTG TAGGACGAGA AGGACCGGCC ATCCATTTAG GTGCCGTCAG TGCCAGTGTA TTAGCGGAAA AGTTTAAGCT TCCCGATAAC AGTGTTCGTG TCATGTGTGC CAGTGGTATT GCCGCTGGAA TAGCGGCGAT TTTTAACGCG CCACTCGCTG CCGTGATTTT TGTATTTGAA GTGGTGCTTA GGGAATACAA AATCCACTAC TTCTTCCCGA TCATGCTTTC AGCTATCTGC GGTGCACTCA GTAGTCAGTT GGTATTTGGT AATGTGCATG AATTCGAGCA GATCGGCGTT GAAGTGATCC CTCTCAGCCA GTACCCACTG TTAGCTATAT TCGGTTTGGT ACTCGGTTGT ATTGCAGCAT TTTTTAATAC CAGCCTATTA AAAATTACTG CCATCGGCCA AAAATGGCCG CTTATTAATC GTCTGTTACT TGCAGGTGCC GTTACTACCC TAGTGGGGCT AGTTTTACCG CAAGCGATTG GTAGTGGTGA ACTGGCTATT GCAGAGACCA TTAATCAGCA CCCGAGCATT TTATTCTTAA GCGCGATTTT AGCTGGCAAG ATCATCGCCA CCATCGCCGC TATAGGCTTA GGCATTCCTG GTGGACTCAT CGGCCCACTC TATGGAATAG GTGCTTTACT CGGCACCATA TTGGCCTTAA TTAGCGCCTT GTTTTTTCCA AGTATCGCGC CCTATATTGG CTTATATACT ATTATCGGCA TGACAGGCAT GATGGGCGTG TGTTTAAGCG CCCCACTCGC GGCACTAGTA GCCTTAATCG AGCTGACAAA TAACGCCTCG ATTATTTTAC CTTCTATGTT TGTGGTGATC CCTGCCTTCT TAATTGCTCA TCAAGGCTTT AAGACCAAGT CTATATTCTT CAAACAGCTC GAGATAATGG GGCTGGGCTA TAAAGTTGCG CCAGTAAATC TTGGATTGCA GAAGGTCGGC GTGCGCCATC TCATGGATAA ACGCTTCGTC ATCGTTTACG ACAACCAAGA ACTATTACTA GAGGTACTTA AGCGTGCAGA GGGTCGCTCT GTATTGGTAC GCAATGCTCA AGGTGCTGTA GAGATGTTAC AGCTTGAACT GCAAGTCAGA GATCAAGACA CCACCTTGAC TCGTCATCCG ATTCAGGGGC TGCCCGATAC ATCTACCCTC AATGAAGTAT ACGCAATTCT TTCTAAGGAA CGACGAGGGG AGGTTTATAT CTATCAAGAG ACAAATGAAC AGATTGTTGG GGTGATTAAT TGGGTCTCGC TGCGTAAAGA GATCCGTTCA GGGCAAGTGT AA
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Protein sequence | MEIPVHPAIV KKREQFQKYL HTDLKDTLSQ SKVSVQLCLL ALLFALFASG VIVLFRLLLV WCDTFTKTQE LNFTDIIDDW RVLLPLFGSF LIWGVAKMGS QRYKRMGIAY VIHRMKLHYG KIPLQSAPGQ FFQALFALAT NFSVGREGPA IHLGAVSASV LAEKFKLPDN SVRVMCASGI AAGIAAIFNA PLAAVIFVFE VVLREYKIHY FFPIMLSAIC GALSSQLVFG NVHEFEQIGV EVIPLSQYPL LAIFGLVLGC IAAFFNTSLL KITAIGQKWP LINRLLLAGA VTTLVGLVLP QAIGSGELAI AETINQHPSI LFLSAILAGK IIATIAAIGL GIPGGLIGPL YGIGALLGTI LALISALFFP SIAPYIGLYT IIGMTGMMGV CLSAPLAALV ALIELTNNAS IILPSMFVVI PAFLIAHQGF KTKSIFFKQL EIMGLGYKVA PVNLGLQKVG VRHLMDKRFV IVYDNQELLL EVLKRAEGRS VLVRNAQGAV EMLQLELQVR DQDTTLTRHP IQGLPDTSTL NEVYAILSKE RRGEVYIYQE TNEQIVGVIN WVSLRKEIRS GQV
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