Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0888 |
Symbol | |
ID | 5661287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1084885 |
End bp | 1085520 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641235433 |
Product | putative transcriptional regulator |
Protein accession | YP_001500750 |
Protein GI | 157960716 |
COG category | [K] Transcription |
COG ID | [COG2345] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCA GCGATAAGAT TTTGCAGATG TTAAAAACTC AAGGGGGGTT GACCGCTAAG TCGATTGCCA CAGAGCTGGG GCTTACCACT ATGGGGGTGC GCCAGCATTT ACAAGGCCTA GAAGAGTGCC GTGATGTGGT TTTTGAGGAT AGAAAGGCGA CTCGTGGTAG ACCCACACGT TACTGGGCAC TCACTGCGCA AAGTAATAGT CATTTCTCTG ATCGACATGA AGAACTAACG GTGCAGTTAA TCGACTCTGT TAAGACGGTC TTTGGTGATG GTGGCTTAGA GCAGCTTATT GCTCATCGTG AACAGGCGTC GTTAACACTT TATCGTGATG CGTTAATCGG CGCTGATACC TTGGTGGCTA AATTACAGAT CTTGGCTCAG TTACGTACAG AGGAGGGTTA TATGGCGACG GTAGAGCAAA CTGATAGATA CTATTGGCTA CTAGAGAATC ATTGCCCAAT CTGCGCCGCG GCATCGGCAT GCCTTAACTT TTGCCGCTCT GAATTGCAGC TATTTCAAAA CCTGCTGCAA GAGGACGCCA CGGTAAGTCG TGAAGAGCAT ATTATCGAAG GTGCGCGGCG TTGCGCCTAT AAAGTGCTGC CTAGCAATAA AGCGAGCGGT CAATAA
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Protein sequence | MKTSDKILQM LKTQGGLTAK SIATELGLTT MGVRQHLQGL EECRDVVFED RKATRGRPTR YWALTAQSNS HFSDRHEELT VQLIDSVKTV FGDGGLEQLI AHREQASLTL YRDALIGADT LVAKLQILAQ LRTEEGYMAT VEQTDRYYWL LENHCPICAA ASACLNFCRS ELQLFQNLLQ EDATVSREEH IIEGARRCAY KVLPSNKASG Q
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