| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0748 |
|---|
| Symbol | |
|---|
| ID | 5661147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 925608 |
|---|
| End bp | 926735 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641235293 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001500610 |
|---|
| Protein GI | 157960576 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCAG TTCTGAAGTC ACATCAATAC AAAGCGCAAT TGAAGCGTGA AACCTTCATC
ATTATCAAGC GTGGCACTAT CTGGGCGACA TATATTAGTT GCGTTCTAGC ATTTGTAGTA
TTAATCAGTA GATATAACTT TATTGGCGAT AACGTCGAAT TTATCGAGCT GCACTCCAAG
TTTGCGCCAC TTATGACCGT TATCATAAGT GGTCTTGCGT GGTTAAAGTA TCGAACTTTG
TTTTTGGTCA CGATGAGTCA AACTTATTTC TACCTCGTGT TGCTCATTAT GTCATGGTGT
TATGTGCTTA TAAGCTTCGC TTTGAAAGTA GGGCATAGCA TGCCGGGTTT AGGCTCTCTA
TCGCACGTGT TGGTTTTTGT ATTTTCGCTA GCACTCTTTC CGAATCGAAA TGTGATGATA
TTAGGGATCT TACCATTCCT AGTCTTTAGC GTTGTTTATC ATTCTTTTCA TTATCCCAGT
GCATTGATTT ATTCCATCCC TAAAATTTTA TGTTTCTTAG GCATTCTTAT ATCAGGCCAG
AAAATTATCT CAGGCTGGTT CTTTAAGGCG GTCACACGCA GCATCGAAAA CAAGAAGCTG
TTACAGCAGT TTAAACGTTT GGCTTTAATT GATGGCTTGA CCAATATTAG TAATCGTCGT
CACTTTGATG ATGTATTAAC TCAAGAGATA AAAGCATCAC TTCGAACTCT GCAACCGTTA
TCTATCATCA TGGTTGATGT GGATTTCTTT AAACCGCTTA ACGATAGCCT TGGTCATCAA
GTAGGTGATA AGCATTTAAC AAAAATTGCA GCAGTATTGA ATAGTGCACT AGAGCGACCA
AGGGATCTGG TGGCTCGTTA CGGCGGAGAA GAGTTTGTTA TCGCGCTGCC TGATACCGAT
TTAAGCGGTG CTATTCGAGT CGCCGAAAAG ATTAAACTGG CAATATCGGA TGCTGAACTG
CACCACCCAA GCTCGAAAGT TTCAGGCTAT GTTACCGTCT CTCAAGGCGT GGCGCAGTGG
CAAGAGGGAA TGGTTCCTGC TCAGCTGCTA GAGATGACTG ATAAGCTGTT ATATCAAGCC
AAGTCTAGCG GCAGAGATCG TTATTGCTCT GAGCATCAAG CTCTTTAA
|
|---|
| Protein sequence | MDPVLKSHQY KAQLKRETFI IIKRGTIWAT YISCVLAFVV LISRYNFIGD NVEFIELHSK
FAPLMTVIIS GLAWLKYRTL FLVTMSQTYF YLVLLIMSWC YVLISFALKV GHSMPGLGSL
SHVLVFVFSL ALFPNRNVMI LGILPFLVFS VVYHSFHYPS ALIYSIPKIL CFLGILISGQ
KIISGWFFKA VTRSIENKKL LQQFKRLALI DGLTNISNRR HFDDVLTQEI KASLRTLQPL
SIIMVDVDFF KPLNDSLGHQ VGDKHLTKIA AVLNSALERP RDLVARYGGE EFVIALPDTD
LSGAIRVAEK IKLAISDAEL HHPSSKVSGY VTVSQGVAQW QEGMVPAQLL EMTDKLLYQA
KSSGRDRYCS EHQAL
|
|---|
| |