| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0715 |
|---|
| Symbol | |
|---|
| ID | 5661114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 879989 |
|---|
| End bp | 881359 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641235260 |
|---|
| Product | amino acid carrier protein |
|---|
| Protein accession | YP_001500577 |
|---|
| Protein GI | 157960543 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.734479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTC ACGCACTTTT AGCCGATATC AACGCCATTG TCTGGGGGCC TATTACCCTG
TGCTTATTGG TGGGAACCGG TCTTTATCTC ACTGTTCGAC TCAAACTGAT CCAAGTTTTT
AAATTGCCTA TGGCGCTGGG TTTATTGTTT AAACCTGCAA GTGGTAAGGG CGACTTATCA
TCATTTGCGG CGCTTTGTAC CGCACTGTCG GCAACTATTG GTACCGGTAA TATTGTGGGT
GTGGCAACCG CAATTAAAAT CGGTGGTCCA GGGGCACTAT TTTGGATGTG GCTAGCGGCC
TTTTTTGGTA TGGCGACCAA GTACGCCGAA TGTATGCTGG CAGTAAAGTA TCGCACCACA
GATGCCAAAG GTAATATTGC TGGTGGCCCT ATGTACTATA TCGAACGTGG CCTAGGGCTT
AAGTGGCTGG CGAAGATCTT TGCCATCTTC GGTGTCGGCG TGGCGTTTTT TGGTATAGGT
ACCTTTGCTC AGGTTAATGC CATCAGTGAT GCCATGACTA TCGCTTTCGA TATTCCTACT
TGGGTAACTG CTGTTGCGCT AACCTTGATG GTGGCGGCGG TGACACTGGG CGGCGTTAAG
CGCATCGCTA ATGTGGCGCA AAAGCTGGTG CCGACTATGG CGCTGGGTTA CGTGTTAGCC
TGTATGTGGG TGCTGTTTAT CTTCTCTGAT CAAATTATTC CTGCATTTGA GTTGGTACTG
CACTCAGCTT TTACCCCTAT CTCGGCTGCA GGTGGCTTCT TAGGCGCAAC GGTTGCTCAA
GCGCTGCAAA TTGGTATCGC TCGCGGCGTA TTCTCTAATG AATCAGGCCT TGGTAGTGCA
CCTATTGCCG CCGCTGCCGC GAAGACTAAC GAGCCGGTAG AGCAAGGCCT TGTGAGCATG
ACAGGAACCT TCTTCGATAC GATCTTAATT TGTACCATGA CAGGTTTAGT ACTGATTATT
ACCGGTGTGT GGAGCGGTGA TACTGCAGGG GCTGCCATGA CCAGCGCCGC ATTTGCTGCC
AGTGGCTCAG AAGTTATTGG TCAATATGTG GTAACCATTG CACTGGTTTG TTTTGCCTTT
ACCACGATTT TAGGTTGGCA TTATTACGGT GAGCGCTGCT GGTATTACCT AACGGGCAGT
CGCCTTGGTG ATAACGGCAT TAAAATCTAC CAATTTACCT TTTTAGGCTT AATTGCAGGT
GGCGCATTTA TTCACTTAGA TCTGATTTGG ATGCTAGCCG ATACCGTAAA CGGCTTGATG
GCGATCCCTA ACTTGATAGC CCTCATAGGC TTAAGGCACG TGATCTTAAA AGAGACTCGC
AAATATTTTG CTAAGCAGCA AGCCTTAGCG AACCAAAGCT CGCTGGCTTA A
|
|---|
| Protein sequence | MNFHALLADI NAIVWGPITL CLLVGTGLYL TVRLKLIQVF KLPMALGLLF KPASGKGDLS
SFAALCTALS ATIGTGNIVG VATAIKIGGP GALFWMWLAA FFGMATKYAE CMLAVKYRTT
DAKGNIAGGP MYYIERGLGL KWLAKIFAIF GVGVAFFGIG TFAQVNAISD AMTIAFDIPT
WVTAVALTLM VAAVTLGGVK RIANVAQKLV PTMALGYVLA CMWVLFIFSD QIIPAFELVL
HSAFTPISAA GGFLGATVAQ ALQIGIARGV FSNESGLGSA PIAAAAAKTN EPVEQGLVSM
TGTFFDTILI CTMTGLVLII TGVWSGDTAG AAMTSAAFAA SGSEVIGQYV VTIALVCFAF
TTILGWHYYG ERCWYYLTGS RLGDNGIKIY QFTFLGLIAG GAFIHLDLIW MLADTVNGLM
AIPNLIALIG LRHVILKETR KYFAKQQALA NQSSLA
|
|---|
| |