| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0427 |
|---|
| Symbol | hemE |
|---|
| ID | 5660827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 530134 |
|---|
| End bp | 531198 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641234964 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001500290 |
|---|
| Protein GI | 157960256 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAT TAAAGAATGA TCGTTATTTA CGTGCGTTAT TAAAACAGCC TGTCGATAGA
ACTCCTGTCT GGATGATGCG TCAAGCTGGC CGTTATCTTC CAGAATATAA AGCAACCCGC
GCAGAAGCTG GCGACTTCAT GTCTCTTTGT AAGAACCAAG ACTTAGCTTG TGAAGTGACT
CTTCAACCTC TACGTCGCTA CGATTTAGAT GCAGCAATCC TGTTCTCTGA TATTTTAACT
GTTCCTGATG CGATGGGCTT AGGTCTGTAC TTTGAAGCTG GTGAAGGTCC ACGTTTCGAA
CGTCCAACCG ATACCATCGA TTCAATTAAA AAGCTTTGCA TTCCAGATCC AGAAGATGAA
CTTGGTTATG TAATGCGTGC AGTAAGCACT ATTCGTCGTG AACTTAAAGG TGAAGTGCCA
CTAATCGGTT TCTCAGGTTC ACCTTGGACA CTCGCGACTT ACATGGTTGA AGGTGGTTCA
AGCAAGGCAT TCGAAAAGAT TAAGAAGATG GCTTACGAAG AGCCAGCTAC TCTGCACATG
CTGCTAGATA AGCTAGCTGA CTCTGTCACT TTGTACCTAA ATGCTCAAGT TGCAAACGGT
GCTCAGTCAC TAATGATTTT CGATTCATGG GGTGGTGCAC TTTCTCACCA CGCATACCGT
GAATTCTCAC TACGTTACAT GCAAAAAATC GTTGATGGCC TAACTCGCCA TGCAGACGGT
CGCCAAGTAC CAGTGACTCT GTTCACTAAA GGTGGCGGAC TATGGCTTGA GTCTATGGCT
GAAACAGGTT GTGATGCACT AGGTCTAGAC TGGACTGTTG ATATCGGTGA CGCACGTCGC
CGTGTAGGTC ATAAAGTTGC TCTACAAGGT AACATGGACC CATCGGTACT TTACGGTACA
CCAGAGCGTA TTCACCAAGA AGTGGATCAA ATCCTTGCTT CTTATGGAGA AGGCACTGGC
CATGTATTTA ACTTGGGTCA TGGTATTCAC CAGCACGTTG ATCCAGAGCG CGCTGGCTCG
TTTATCAACT CAGTTCATGA GTTATCGCCT CAGTATCACA AGTAA
|
|---|
| Protein sequence | MAELKNDRYL RALLKQPVDR TPVWMMRQAG RYLPEYKATR AEAGDFMSLC KNQDLACEVT
LQPLRRYDLD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDSIK KLCIPDPEDE
LGYVMRAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKAFEKIKKM AYEEPATLHM
LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHHAYR EFSLRYMQKI VDGLTRHADG
RQVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIGDARR RVGHKVALQG NMDPSVLYGT
PERIHQEVDQ ILASYGEGTG HVFNLGHGIH QHVDPERAGS FINSVHELSP QYHK
|
|---|
| |