| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0390 |
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| Symbol | |
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| ID | 5660790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 471511 |
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| End bp | 472479 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641234924 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001500253 |
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| Protein GI | 157960219 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000241249 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCG CCTGAAAAAT CAGTTGATCG TGGCGCCAAT GGCAGGTGTC
ACTGACCAAC CCTTTAGAAA TCTCTGCTTA CGTTATGGCG CAGCCTTAGC CGTGTCGGAG
ATGCTTTCAT CGAATCCTGA TGTTTGGGAT ACCGATAAAA GCCGCTTGCG TATGACACAC
GCAGGTGAAG ACGGAATACG TTCGGTTCAG ATTGCCGGAG CAGATCCAGA GTTAATGGCT
AATGCCGCTG TTGTGAACGT ACAACAAGGG GCACAGATCA TTGATATCAA TATGGGCTGT
CCAGCAAAAA AAGTGAATAA GAAGCTCGCA GGATCGGCTT TGTTGCAAGA CCCAGTTCAA
GTAGAAGCGA TTCTACGTGC CGTGGTAGCA GCGGTTGATG TTCCTGTGAC GCTAAAAATT
CGAACGGGAT GGGCTCCAGA GCACAGGAAT GGTGTTCATA TCGCCCAGAT CGCAGAAGAT
TGCGGTATTG CCTCATTGGC CGTTCACGGC CGAACTAGGC AGTGCATGTA CAAAGGCAAC
GCCGAGTACG ACACAATTAA AGCGATTAAA AAACAGATCT CGATACCCGT TGTCGCCAAT
GGAGACATTT TAACCCCAGA GAAAGCACGT TTTGTGCTGG ATTATACTGG TGTGGATGCC
CTGATGATTG GACGAGGAGC TCAAGGACGA CCTTGGATAT TTAGGGAAAT CCAACATTAC
CTGGATACAG GTAATAAGCT AGCGCCCGTA GAGATGGATG AAAAGCGTCA AGTTATGCTT
GAACACCTGA AACTACTGTA CAACTTGTAT GGTGATTATA AGGGCATCCG CTTCGCAAGA
AAGCATGTTG GCTGGTACTT AGACCAAGAA AATCAACGGC CTTTTAGAGC CGAGTTTAAT
CGACTCGAAA CCGTTGAAGA ACAATGTTCC ATGGTGGAAC GCTATTTTGA TGAATTTGTT
GCATATTAA
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| Protein sequence | MQIGPYRLKN QLIVAPMAGV TDQPFRNLCL RYGAALAVSE MLSSNPDVWD TDKSRLRMTH
AGEDGIRSVQ IAGADPELMA NAAVVNVQQG AQIIDINMGC PAKKVNKKLA GSALLQDPVQ
VEAILRAVVA AVDVPVTLKI RTGWAPEHRN GVHIAQIAED CGIASLAVHG RTRQCMYKGN
AEYDTIKAIK KQISIPVVAN GDILTPEKAR FVLDYTGVDA LMIGRGAQGR PWIFREIQHY
LDTGNKLAPV EMDEKRQVML EHLKLLYNLY GDYKGIRFAR KHVGWYLDQE NQRPFRAEFN
RLETVEEQCS MVERYFDEFV AY
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