| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0237 |
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| Symbol | |
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| ID | 5660637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 267170 |
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| End bp | 269236 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641234766 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001500100 |
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| Protein GI | 157960066 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00361408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAGG GAATAATGAG ATCTTTAACC ACGCCAAAAG CCAGCTTTAA GGTAATGCCT
TTAGTTAAGG TCATTATTGG TTTCGTATTA ATCGTTGGCA TGACTCAGCA TTCATATGCC
GCAAATCGAC TCATTGATGT CAAATATCAC GCCGTTGTGG ATCATCAGCT AGAACTACAG
TTGATTTTTG AGAACGATAT TAAAGAGCCT GAAATCGATT TAAATGCCTC TCCTGCACAG
ATCATTCTAG GGTTTGACGA CAGTATTTCA GCATTAGAAA AGCAAACTTT GCCGATTAAA
ACCGTTGGTG TAGAAACTGT GAGTACGGTA CCCAATGGTA ATAACTTACA GGTTTTTGTA
GGCTTAAATA AGGTGAAGCC TTATCAAGGT AAAGTGGTGG GTAATACCTA TCGTTTAACC
ATTAATGACG AGGTGGCCAG TCAGGGAATA GCAGGCGAAA ATCCTTTTGT TAATAGCATT
GAGAATATTG ATTTCCGCCG TACAGCTGAT GGTGGTGGCG AGCTACTTGT AAAGCTCAAT
AATAGCTCCG TGGCTGCTAA CGTTGAGCAG GTCGGTGCCA AGCTCGAACT AAAACTTTAT
AACACAGATA TTAATAGTGA TTTCTTATAC GTGATGGATG TATATGATTT TGCGACACCC
GTTAAGAGTT TTGAGACATT CAAAGAAGAT TTAACCGCAC GCTTTCTTAT CGATATTGAC
GGTAACTATG AATATAACTA CAAGCAAGAC GGTAGTTTGT TCAAGTTAAC CATGAAGAAA
ACCGAGCGCA TGAATATCGT TAAGGAAGAT AAGAAATATG ATGGACGTTC ACTGTCATTA
AACTTCCAGA ATATTTCGGT TAGAACCGTG CTGCAGATTA TTGCCGATTA CAACAACTTC
AACTTGGTCA CCAGTGATAC AGTTGAAGGG GATATCACTT TAAGACTAGA TGATGTGCCT
TGGGATCAGG CATTAGATCT TATTCTGCAA GCAAAAGGCT TAGATAAGCG TATTGAAGGT
AATATCTTGA TGGTTGCACC TATCGAGGAG ATCGCTATCC GTGAAAGCCA AGAGCTAAAG
AATATGCAGG AAGTAAAGGA GCTAGCTCCG CTTTACTCTG AATATTTACA GATTAACTAT
GCTAAAGCCG TCGATATTGC CGCCTTGCTA AAGGGCGAAG ACTCTAGTCT GTTAACTAGC
CGTGGTAGTG TCGCAGTAGA TGAGCGTACC AATACCCTAT TGGTCAAAGA TACTGAAGAG
ACATTGGAAA ACATTCACCG CCTAATTGAA GTCTTAGATA TACCAATCAA GCAGGTGTTG
ATTGAAGCGC GTATGGTGAC AGTAAAGGAC GATGTTTCAG AAGATCTTGG TGTGCGTTGG
GGTGTTACTG ATCAACAAGG AGATAAAGGA ACGTCAGGTA GTTTAGAGGG GGCGGGTGAT
ATCGCAAACG GCATAGTACC AAGCTTAAGC GATCGTTTAA ACGTTAACCT TCCCGCAGCT
GTGGCTAATC CTACAAGCAT TGCATTTCAT GTGGCTAAGC TTGCTGATGG TACAGTGCTA
GACCTTGAGC TGAGTGCCTT AGAACAAGAA AATAAGGGTG AGATTATTGC GAGTCCGCGT
ATCACTACTT CTAACCAGAA AGCCGCTTTC ATCGAGCAAG GTGTTGAGAT CCCCTATGTT
GAGGCAAGCT CAAGTGGTGC AACAACGGTA ACCTTTAAAA AGGCAGTGTT ATCGCTACGA
GTGACACCTC AAATCACACC CGATAACCGA GTAATTTTAG ATCTTGAAAT TACCCAAGAC
TCGCAAGGTA AGACGGTTGA TACGCCAACA GGACAAGCTG TCTCAATCGA TACACAACGC
ATTGGCACGC AAGTGCTGGT GGACCACGGC GAGACGATTG TACTGGGCGG GATCTACCAG
CAACAACTTA TCAGCCGAGT GAGTAAAGTG CCTATTCTGG GGGATATCCC ATACTTAGGC
TTTATGTTCA GAAGTACTTC TGACAAAAAT GAGCGACAGG AGCTACTCAT TTTTGTTACG
CCTAAGATAG TCTCCGAAGC GCTATAA
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| Protein sequence | MTEGIMRSLT TPKASFKVMP LVKVIIGFVL IVGMTQHSYA ANRLIDVKYH AVVDHQLELQ
LIFENDIKEP EIDLNASPAQ IILGFDDSIS ALEKQTLPIK TVGVETVSTV PNGNNLQVFV
GLNKVKPYQG KVVGNTYRLT INDEVASQGI AGENPFVNSI ENIDFRRTAD GGGELLVKLN
NSSVAANVEQ VGAKLELKLY NTDINSDFLY VMDVYDFATP VKSFETFKED LTARFLIDID
GNYEYNYKQD GSLFKLTMKK TERMNIVKED KKYDGRSLSL NFQNISVRTV LQIIADYNNF
NLVTSDTVEG DITLRLDDVP WDQALDLILQ AKGLDKRIEG NILMVAPIEE IAIRESQELK
NMQEVKELAP LYSEYLQINY AKAVDIAALL KGEDSSLLTS RGSVAVDERT NTLLVKDTEE
TLENIHRLIE VLDIPIKQVL IEARMVTVKD DVSEDLGVRW GVTDQQGDKG TSGSLEGAGD
IANGIVPSLS DRLNVNLPAA VANPTSIAFH VAKLADGTVL DLELSALEQE NKGEIIASPR
ITTSNQKAAF IEQGVEIPYV EASSSGATTV TFKKAVLSLR VTPQITPDNR VILDLEITQD
SQGKTVDTPT GQAVSIDTQR IGTQVLVDHG ETIVLGGIYQ QQLISRVSKV PILGDIPYLG
FMFRSTSDKN ERQELLIFVT PKIVSEAL
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