| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0218 |
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| Symbol | |
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| ID | 5660618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 230915 |
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| End bp | 232894 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641234739 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001500081 |
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| Protein GI | 157960047 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000250074 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCAG AATTAGGACA CTTTTCGCTG ATTATCGGCC TGGCATTCGC CATGCTGTTA
GCCATCGTTC CTTTAGTAGG TGTAGCTCGT AAAGACCAAT ACCTAGTGCG CTATGCTTGG
CCACTAAGTT ACGGCATGTT CTTCTTTATT CTCTTCTCTG TTATTGCGCT TGGCTATAGC
TTCGCAGTCG ATGACTTCTC TGTAGCTTAT GTAGCACATC ATTCCAACTC TGAATTGCCA
ATCTTTTTTA AGATAGCTGC CGTATGGGGT GGGCATGAAG GTTCATTGCT ATTCTGGGTA
TTCTCATTAG CGGCTTGGGC TGCAGCGGTT GCGCTATTTA GTAAGGGCTT AGAAGAAGTC
TTTACTGCAC GAGTGCTGTC GGTGTTAGCA ATGATCTTAA TCGGCTTTAC GCTATTTATG
TTGCTGACCT CTAGCCCATT TGAGCGTTTA TTCCCAATCC CGATGGAAGG TCGTGACCTT
AACCCAATGT TGCAAGACGT TGGATTGATT TTCCACCCTC CAATGTTGTA CCTAGGTTAT
GTTGGCTTCT CTGTCAGTTT TGCATTCGCA ATTGCTGCTC TTATGAGTGG ACGACTAGAC
TCTGCATGGG CTCGTTGGAG TCGTCCTTGG ACACTAGCAG CTTGGGTATT CCTAACTGGC
GGTATCTCAC TAGGTTCTTG GTGGGCATAT TACGAACTCG GTTGGGGTGG TTGGTGGTTC
TGGGATCCAG TTGAAAACGC CTCTTTTATG CCTTGGTTGA TTGGTACAGC TCTACTTCAC
TCGTTAATCG TAACCGAGAA GCGTGGTGCA TTCCGTAACT GGACCGTTCT ACTTTCAATC
TTTGCTTTCT CATTAAGTTT ACTTGGTACC TTTATTGTTC GTTCTGGCGT GTTAACTTCG
GTTCACTCGT TCGCTGCGGA TCCAAGTCGA GGTATGTTCA TCCTATTGCT ACTCGGTTTA
GCAATTGGTG GCTCACTCAC ACTATTCGCT TTCAGAGCGA GTGAGATGCG TAGCCCAGCA
CGTTTTGAGC TGAAATCAAA AGAGACCATG CTACTGGTAT GTAACCTGTT GTTAACGGTC
GCTTGTGGTA CTGTTTTACT CGGTACTCTT TACCCGCTGC TAATCGATGC ACTGGGTATG
GGTAAGATCT CTGTAGGACC TCCATACTTT AACGCCGTAT TTGTTCCAAT CGTTCTTGTA
CTATTTGGCT TTATGGGTAT AGGTCCAATT ATCCGCTGGA AGAAATCTAA AGCGGGTGAG
CTTAAGCGTC AGCTTATTAT CCCTGCAGTG ATTTCTGCAG TCGTTGGTCT AGCTGCGCCA
TTTATTGCCG GCGGTGAGTT TAACGCTTGG GTAGTATTTG GTATTGCGGC AGCGGTATGG
GTCACACTGA TGACATTCCG TGCTGCTTAT AACATGGTTA AGACTAAAGA TGGCTCAATT
GATTTGACTC GTCTTGGACG TAGCCAGCTG GGCATGATCA TTGCTCACCT TGGTATTGCG
GTATCTGTTG TTGGTGCCAC CATGGTTTCG AACTACTCAT TAGAGAAGAG TGTCCGTATG
GGCCCAGGCA TTTCTCATGA GTTAGCGGGT TATACCTTTA ACTATGTTGA AACCAAGAAT
GTTGTTGGTC CAAACTACAC GGCTCAACAA GGTCAAATTG AGGTTTACCA GGGAGACGAT
TATGTAACCC TGCTTAGACC TGACCGTCGC CAATACAATG TTCGTACTAT GGACATGACT
GAGGCGGGTA TCGACTGGGG CCTATTCCGA GATCTTTACG TGACAATGGG TGATCCAATT
AGCCGTACTG AGTACGCGGT GCGTATTAAC TACAAGCCTT TCGTTCGTTG GATCTGGTTT
GGTTCAATCT TTATGATGGT TGGTGGTTTC TTCGCTGCTT CTGATAAGCG TTATCGCGTA
AAGGCTAAGA GCACAGAAAA GACAGCTGCT AAAGAAGCTG ACAAGTTAGC TACGGCTTAA
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| Protein sequence | MIPELGHFSL IIGLAFAMLL AIVPLVGVAR KDQYLVRYAW PLSYGMFFFI LFSVIALGYS
FAVDDFSVAY VAHHSNSELP IFFKIAAVWG GHEGSLLFWV FSLAAWAAAV ALFSKGLEEV
FTARVLSVLA MILIGFTLFM LLTSSPFERL FPIPMEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGRLD SAWARWSRPW TLAAWVFLTG GISLGSWWAY YELGWGGWWF
WDPVENASFM PWLIGTALLH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMRSPA RFELKSKETM LLVCNLLLTV
ACGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGIGPI IRWKKSKAGE
LKRQLIIPAV ISAVVGLAAP FIAGGEFNAW VVFGIAAAVW VTLMTFRAAY NMVKTKDGSI
DLTRLGRSQL GMIIAHLGIA VSVVGATMVS NYSLEKSVRM GPGISHELAG YTFNYVETKN
VVGPNYTAQQ GQIEVYQGDD YVTLLRPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SRTEYAVRIN YKPFVRWIWF GSIFMMVGGF FAASDKRYRV KAKSTEKTAA KEADKLATA
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