| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0217 |
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| Symbol | |
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| ID | 5660617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 229230 |
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| End bp | 230483 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641234738 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001500080 |
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| Protein GI | 157960046 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0270987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACAT TCTGGATTTT GATAGCCTCA TTTCTACTGG TTAGCCTAGC GCTGATTTGG
TTCCCACATT TCCGTCAACA GCGCATGCTG AGGACTGAAG AAGCCGATGT TCGTAAGGGT
ACTAACCTCG AACTATTCAA TGAGCGACTC GCTACTTTAG AGAAAGAACT TCAAGAAGAA
CTTCTCGATC AACCTGAGTT TGATGCCCTT AAGAAAGAGC TTGAAATCAG CTTACTTCAA
GACATGAAGC AAGGTGATGA CGAGTCATTA GTTAACACAC TAAAGCCAAA AAGCATCATG
TGGCCGTCAG TTATGACCGT CGTTATTGTC GGTATCTGTG GTTACATGTA CTCAACATTG
GGTGCCTATA AAAATTTAGA CCAACCAATG ACAGCAAATG ATCCCCATGC AGGCCAAACC
ACTGAACAGA TCATGTCGCA GCGTGTTGGC ATGATGGAAG CACAAGCACA AGCAGAGCCT
GAAAATAGCC AATTGTGGTT CAATCTTGGT CACGCTTACA TTTCAGCAAA CCGTTATGAT
GACGCAATCA AAGCATTCGA TAAGACAATA GATCTTGTTG GTGTTCATGC TGAGTTACTT
GGCCCGAAAG CAACAGCACT TTATTACCGC TCTAACCAAA AGATGACACC AACGGTTCAA
GCTCTTGTTG ATCAAGCACT AAGCCTTGAC CCAGTAGACC CATCTACACT GTTACTTGTT
GGCATGGATT CGTTCTTTAC CGCGGACTAT CCAAAAGCAA TTGACGCTTG GCAGTTAATC
CTAGATAGCG ATCGTACTGA CGTTGACCGT GGTGCAATCA TGAATGCTAT CGATAGCGCT
AAAATGAGAC TCGGATCAGA TGGCGCGATG CCGAATGATG ATGCTCATAA AAATGTACAG
TCTGCAACAA CGGCAAAGAC TGTAACAGTT GAAGTTTCTA TCTCACCAGA GCTTCAGGCT
AAAGTGGCAA GTACAGATAT GCTATTTATC TTCGCTCGCT CAACTGAAGG CCCTAAAGTA
CCTCTTGCAG CTACAAAGAT TTCTGCGGAG TCTCTACCTG CAACGATTAC TTTAGATGAC
AGCACCGGCA TGGGTGGCAA CACTAAGCTA AGCGATGCAA AAGCCGTTGA AATTATCGCG
GTACTGTCTA AGCATGGTAG CGTAAGAGCT CAATCTGGTG ACATCCAAGG CACACTTGCG
ATGCTAAAAG TTGGTGAGAC TGGCCAACTA GTTCTTGATA CTCAAGTTCA ATAA
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| Protein sequence | MTTFWILIAS FLLVSLALIW FPHFRQQRML RTEEADVRKG TNLELFNERL ATLEKELQEE
LLDQPEFDAL KKELEISLLQ DMKQGDDESL VNTLKPKSIM WPSVMTVVIV GICGYMYSTL
GAYKNLDQPM TANDPHAGQT TEQIMSQRVG MMEAQAQAEP ENSQLWFNLG HAYISANRYD
DAIKAFDKTI DLVGVHAELL GPKATALYYR SNQKMTPTVQ ALVDQALSLD PVDPSTLLLV
GMDSFFTADY PKAIDAWQLI LDSDRTDVDR GAIMNAIDSA KMRLGSDGAM PNDDAHKNVQ
SATTAKTVTV EVSISPELQA KVASTDMLFI FARSTEGPKV PLAATKISAE SLPATITLDD
STGMGGNTKL SDAKAVEIIA VLSKHGSVRA QSGDIQGTLA MLKVGETGQL VLDTQVQ
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