Gene Spea_0199 details

Gene Information

• Locus tag: Spea_0199
• Symbol: rplF
• ID: 5660600
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 217536
• End bp: 218066
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641234721
• Product: 50S ribosomal protein L6
• Protein accession: YP_001500063
• Protein GI: 157960029
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000586968
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TCGCAAAAGC ACCAGTCGCT ATCCCTGCAG GCGTAGAAGT GACTTTAAAC 
GAACAAACTA TCACCGTAAA AGGTACTAAA GGTAGTTTGA CTCGAGTTAT TAACTCTGAC 
GTTTCTGTTG TTGTTGAAGA CAATGAAATC AAGTGTTCAC CAGTTGAAAG CGCTAAAACC 
GCTGCTCAAG CTGGTACAGC TCGTGCATTA ATCAACAACA TGGTTGTTGG TGTTACTGAC 
GGTTTTGTTA AGAAACTTCA GTTAGTTGGT GTTGGTTACC GTGCAAAACT TGCCGGTAAA 
GATATCGACC TAACTCTAGG TTTCTCACAT CCTTTGGTTC ACAAACTTCC TGACGGCGTT 
ACAGCTGAGT GTCCATCACA AACTGAAATC GTACTTTCTG GTACTGATAA GCAGTTGATC 
GGACAAGTCG CAGCTGAGAT TCGCGGTTAC CGTCCACCAG AGCCTTACAA AGGTAAAGGT 
GTTCGCTATG CTGACGAACA AGTACGCCGT AAAGAGGCTA AGAAGAAGTA A 

 

Protein sequence

MSRVAKAPVA IPAGVEVTLN EQTITVKGTK GSLTRVINSD VSVVVEDNEI KCSPVESAKT 
AAQAGTARAL INNMVVGVTD GFVKKLQLVG VGYRAKLAGK DIDLTLGFSH PLVHKLPDGV 
TAECPSQTEI VLSGTDKQLI GQVAAEIRGY RPPEPYKGKG VRYADEQVRR KEAKKK