Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0083 |
Symbol | fliF |
ID | 5660484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 92510 |
End bp | 94210 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641234596 |
Product | flagellar MS-ring protein |
Protein accession | YP_001499947 |
Protein GI | 157959913 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAACTA CATTGACTCA AACCAGCCCT GCCGCAACGA ATGCTGGTGT CAATAACCCG CTGAATTCAC TGAAAGAAAA GTGGCAACAA TATAATCGAG GCGACCGTCA GGTAGTGATA TTAGCCGTAC TCGCTATTGT TGCCGCTTGC GTCATTGTGT TGATGCTATG GAGTGCGAGT CAAGGCTACC GTCCCCTATA TGGTAACCAA GAAGGCGTTG AAACTTCACA AATTATCGAG GTACTTGAAG CGGAAGGTAT TAGTTATCGT ATCGACGCGA ACAGCGGGCT GATCTTGGTT ACCGAAGATA AGCTCGGCCC TGCCCGCATG CTACTGGCAG CCCGTGGCGT TAAGGCTAAG GTGCCATCAG GAATGGAGTC GCTCGAAAAC TCTAACATAG GCACCAGCCA GTTTATGGAA CAGGCCAAGT ATCGCTATAG CCTAGAGGGT GAGCTATCAC GCACCATTAT GGCATTGAAG GCGGTTAAGA CCGCTCGAGT CCATTTGGCC ATCCCTAAGA AAACCCTATT TATTCGTCAA CAGCCTGAGT TACCTACAGC CTCAGTGATG CTTGAGCTCT ATGCCGGTAG CAATATTCAA CCGGAACAGA TTGAGTCTAT CGTCAACTTA GTGGCTGGTA GCGTTACCGG TATGACTCCC GATCGTGTGC AAGTTGTCGA TCAAGAAGGT AACCACTTAA GCTCATCTAT TAGCGTTAAT AAAGATATCA CTCAGGCACG AGACCGCCAG CTCAAATACA CCCAAGAGTT AGAGCAAAGC TTAATTGATC GCGCCTCAAG CATGCTGCTG CCTATTCTCG GACGCGATCA CTTTGAAGTA CAAGTCGCTG CAAACGTGAA CTTTAACCAA GTGGAAGAGA CCAAAGAATC TCTAGACCCA CTGGCAGTCG TCACCAAAGA GAATCTAACC AGTAATGAAA CCAATAGCGA TATGGCCCTG GGTATTCCTG GTGCTTTAAG CAATCAACCA CCAGCCGCTG AAGCAGATGA GAGTAACGCC CGTCGTAACT TAAACTCACA GGAAAGCCGT CAATTCGACA CCGGCCGCTC AGTCAGACAC ACCCGCTATC AACAGATGCA GTTAGAAAAT CTATCGGTAT CGGTACTGAT TAATAAACAA TCCGCCGGAG AGACGGGCTG GACTCAGACT CAACTAGACC AATTAAGCAG CATGGTACAG GACGCGATTG GCTTCTCTGC CGCTCGAGGC GATCAATTCA GTATTAACAG CTTTGATTTT GCACCAACCC AAATTGCTGA ATTTGAACCT ATGCCATGGT GGCAGGGTGA AAGTTATCAA ACCTACTTAC GCTACTTTAT CGGCGCGCTA TTAGGCCTTG CAATGATATT TTTCGTCTTG CGCCCTCTGG TTAAGCATCT GACCAAAACG GTTGAGCATA ACTTAAAAAG CATTGATGAG CCTGCGCAGC CAAGCTTGCC ACCAGCACAA GCGACCGTTA CCAAACTGGA AGGCGGTAAT AATGCACAAG CAATCGCAGA TCAGTTGATA GGGCAAAACC AGAAGACTGG CGACCTTAAC TGGAGCGGCG ATGCTAGCCT TCCAGAACCA AGCTCACCTT TAGCGGTCAA GATGGAGCAC CTCAGTTTAC TCGCTAACCA AGAGCCTGCA CGCGTAGCTG AAGTGATAGC CCACTGGATT GGCGATACTG AGCATGATTA A
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Protein sequence | MSTTLTQTSP AATNAGVNNP LNSLKEKWQQ YNRGDRQVVI LAVLAIVAAC VIVLMLWSAS QGYRPLYGNQ EGVETSQIIE VLEAEGISYR IDANSGLILV TEDKLGPARM LLAARGVKAK VPSGMESLEN SNIGTSQFME QAKYRYSLEG ELSRTIMALK AVKTARVHLA IPKKTLFIRQ QPELPTASVM LELYAGSNIQ PEQIESIVNL VAGSVTGMTP DRVQVVDQEG NHLSSSISVN KDITQARDRQ LKYTQELEQS LIDRASSMLL PILGRDHFEV QVAANVNFNQ VEETKESLDP LAVVTKENLT SNETNSDMAL GIPGALSNQP PAAEADESNA RRNLNSQESR QFDTGRSVRH TRYQQMQLEN LSVSVLINKQ SAGETGWTQT QLDQLSSMVQ DAIGFSAARG DQFSINSFDF APTQIAEFEP MPWWQGESYQ TYLRYFIGAL LGLAMIFFVL RPLVKHLTKT VEHNLKSIDE PAQPSLPPAQ ATVTKLEGGN NAQAIADQLI GQNQKTGDLN WSGDASLPEP SSPLAVKMEH LSLLANQEPA RVAEVIAHWI GDTEHD
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