Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0032 |
Symbol | |
ID | 5660433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 35245 |
End bp | 36333 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641234539 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001499896 |
Protein GI | 157959862 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGGT TAATATTACT TGCTTCACTT ATAATTGGTT GCACTTCTGT TTTCGCTGAT ACTTTAACGC TAAAGTCGGG GCATCCTGAT TCTTATGTGG TTCAAAAAGG CGATACGCTT TGGGATATCT CTGCATCTTT TCTTAACGAT CCATGGCGTT GGCCTAAGTT GTGGGGAGTC AATCCGCAAG TAGCTAACCC CCATTTGATT TACCCCGGAG ATAGGCTGAC CATAGTTTTT ATCGATGGTG AACCACGCCT AGTAGTTAAG CCCCATGTTA GAAAGAGTCC TCAAGGGCGT ATTTCGGCTA AAGGTGGTGC TATTCCGGCG ATAGATCTTT CTCTTATTCA ACCCTATTTA TTACAACATC GCGTGGTCGA TGCCGATTGG TTTGAGCTGC AGCCAAAAGT GATGGGTGGT GAGAGTCCCT CAAATTTCCA TGTCGTTAAT GACATTATTT ATGTGCAGGG GGAGCTGACT GTTGGCGATA AGTTTGGCGT CTACCTAGAT GGCCGTACCT TTAAGAATAG TGACGGTGAT AACTTAGGTT TAGAAGTGAT TTTGTCTGCC TCAGGTCGAG TGGTTGAGTC TGGGCCTATC TCCAAGGTGG AGCTGCTGAG CAGCTTGAGG GAGACCGCTG CCGGTTACCG TGTACTACCT ATCGAAGATG ATTTGTTAAT GTCGGCGTAT TTTATGCCTC GTGCGGCAGA GTTAACTGAG CCCGCGACGG TTCTCGCTTC GGGGAAGAGC ATTCGAGAAA TGGGTAAACT GGATGTAGTT TACTTAGATC GTGGTGCAGT AGACGGACTC GAAACTGGGC ATGTGTTCTC AATCTTTAAA GATGGCGACG TTGTAGTGAT CGATGGTGAT GGCATACCTG TACAGCCCCA TGATCGCAAT CGCTACGAGA AGATGCTCGC CAATATCTCT TCTGACAGCG CAGTTAAGAT GCCGGATCTT TACCGCGGTA AATTGATGGT GTTTAAAGTT TTCGATAAAA CCAGCATGGG TATTATCTTA GTCAACGAGC GTCCTGTGCG AGTGGCTGAT AAGTTAGCGA TACCTGATTC GCTGTTCCGT AGCGAGTAG
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Protein sequence | MKRLILLASL IIGCTSVFAD TLTLKSGHPD SYVVQKGDTL WDISASFLND PWRWPKLWGV NPQVANPHLI YPGDRLTIVF IDGEPRLVVK PHVRKSPQGR ISAKGGAIPA IDLSLIQPYL LQHRVVDADW FELQPKVMGG ESPSNFHVVN DIIYVQGELT VGDKFGVYLD GRTFKNSDGD NLGLEVILSA SGRVVESGPI SKVELLSSLR ETAAGYRVLP IEDDLLMSAY FMPRAAELTE PATVLASGKS IREMGKLDVV YLDRGAVDGL ETGHVFSIFK DGDVVVIDGD GIPVQPHDRN RYEKMLANIS SDSAVKMPDL YRGKLMVFKV FDKTSMGIIL VNERPVRVAD KLAIPDSLFR SE
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