Gene Spea_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0020 
Symbol 
ID5660421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp24050 
End bp24664 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content44% 
IMG OID641234527 
Producthypothetical protein 
Protein accessionYP_001499884 
Protein GI157959850 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGTGAGA GTTATCTCAT CCCTGCAGCG GAATTATTGA TAGAAGAAGA GATAAAGCAT 
AGTCGCTTTA TCTCTTTTCT ATTCCACTGC CAGTCAGCTG AAGAGCTTAA GTGTGTACTC 
ACTAATGTAA AGGTTGAGTA CCCAGGAGCT AACCATTACT GCTATGCGTT TGTTGGTGGT 
GCACCCAATG ACAGTGTCAA TATGGGGTCT AGTGATGATG GTGAGCCTTC CGGTAGTGCT 
GGTCGCCCCA TGTTGGCTGC CTTACAAGGA GCAAACATTG GTGAGCTGGG CGCGATAGTA 
ATTCGTTACT TTGGTGGCAC CAAGTTAGGC GTGGGGGGAT TAGTTCGAGC CTATAGCTCA 
GGTATTAAAC AGGCTATTGT ACAACTCGAA ACCCAACTGA AGCAGATCCG TTATCCGGGA 
AGCTTGGTGT GTGAATATCA TCAACTCAAA GATGTTGAAC ATCTATTCAC TCAGTTTGAT 
GTATTGATTG AAGATAAGCT GTTTAGCGAC AAGATTGTTA TTCAGTTTGC CATCCCTAAG 
GCTTTTAAAC AGCAACTGAA GCTTGATTTG GCGACTCTGA GTAAGGGGCA GCTAAAAGCG 
GAGTTTGAAG AGTAA
 
Protein sequence
MSESYLIPAA ELLIEEEIKH SRFISFLFHC QSAEELKCVL TNVKVEYPGA NHYCYAFVGG 
APNDSVNMGS SDDGEPSGSA GRPMLAALQG ANIGELGAIV IRYFGGTKLG VGGLVRAYSS 
GIKQAIVQLE TQLKQIRYPG SLVCEYHQLK DVEHLFTQFD VLIEDKLFSD KIVIQFAIPK 
AFKQQLKLDL ATLSKGQLKA EFEE